MmuALTD1020199-3/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000032514 | Ttc21a
Description
tetratricopeptide repeat domain 21A [Source:MGI Symbol;Acc:MGI:1921302]
Coordinates
chr9:119966013-119966459:+
Coord C1 exon
chr9:119966013-119966100
Coord A exon
chr9:119966101-119966174
Coord C2 exon
chr9:119966267-119966459
Length
74 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
3' ss Seq
CATGAGTCCTGTGCCCACAGCTC
3' ss Score
6.69
Exon sequences
Seq C1 exon
GCACATTGGACAGCCCAATGAAGCCTTGAGGTTTCTGAACAAAGCCCGAAAGGACAGCACTTGGGGCCAGCTTGCCACCTGTTACATG
Seq A exon
GTACAGATCTGTCTGAACCCTGACAATGAGATTGTCGGTGGAGAGGCTTTTGAGAGCCTGGTGGGTGACAGCAA
Seq C2 exon
CTCTGCCAGTAGAAAGGAGTCTCAGCAGCACGGGGTGCGCACTGCAGAGAAGCTACTTCGGGAATTTTACCCACACTCGGAATCCGGGCAGACCCAGCTGCGGCTGCTGCAGAATCTCTGCCTGCTGGCCACCAGGGAGAAGGCGAATGTAGAGGTGGCTCTGGGAGCCTTTATCGAGATGGCCCAGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032514-34-37,35-37,37-37-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.138
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF145591=TPR_19=PU(35.8=29.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCTTGCCACCTGTTACAT
R:
GCCACCTCTACATTCGCCTTC
Band lengths:
181-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types