RnoALTD0032236-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000034089 | Ttc21a
Description
tetratricopeptide repeat domain 21A [Source:RGD Symbol;Acc:1308806]
Coordinates
chr8:128654174-128654664:+
Coord C1 exon
chr8:128654174-128654321
Coord A exon
chr8:128654322-128654335
Coord C2 exon
chr8:128654472-128654664
Length
14 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
3' ss Seq
CATGAGTCCTGTGCCCACAGCTC
3' ss Score
6.69
Exon sequences
Seq C1 exon
GCACATTGGACAGCCCAATGAAGCCTTGAGGTTTCTGAACAAAGCCCGAAAGGACAGCACTTGGGGCCAGCTTGCCACCTGTTACATGGTACAGATCTGTCTGAACCCTGACAACGAGATTGTCGGTGGAGAGGCTTTTGAGAGTCTG
Seq A exon
GTGGGTGACAGCAA
Seq C2 exon
CTCTGCCAGTAGGAAAGAGTCTCAGCAGCACGGGGTGCGCACTGCAGAGAAGCTACTTCGGGAATTTTACCCACACTCGGAGTCCGGGCAGACCCAGCTGCGGCTGCTGCAGAGCCTCTGCCTGCTAGCCACCAGGGAGAAGGCGAACATAGAGGTGGCTCTGGGGGCCTTCATCGAGATGGCCCAGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034089-27-27,28-27-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.138
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF145591=TPR_19=PU(59.5=76.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTGTCGGTGGAGAGGCTT
R:
TCCCGAAGTAGCTTCTCTGCA
Band lengths:
95-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]