MmuALTD1020881-3/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000033327 | Tnxb
Description
tenascin XB [Source:MGI Symbol;Acc:MGI:1932137]
Coordinates
chr17:34718383-34718731:+
Coord C1 exon
chr17:34718383-34718478
Coord A exon
chr17:34718479-34718534
Coord C2 exon
chr17:34718635-34718731
Length
56 bp
Sequences
Splice sites
5' ss Seq
CTGGTGGGT
5' ss Score
6.29
3' ss Seq
TGGCCTTGATTGCTTTCCAGGTG
3' ss Score
8.8
Exon sequences
Seq C1 exon
GTGGGCTGCGGATCCCCTTCCCCCGGGACTGTGGGGAGGAGCTGAAGAATGGGCCCAGTGCCTCAAAGACCACCACCATCTTCCTCAATGGCAACC
Seq A exon
GTGAGCGGCCTTTGGATGTGTTCTGTGACATGGAGACTGATGGAGGTGGTTGGCTG
Seq C2 exon
GTGTTCCAGCGCCGCATGGATGGACAGACGGACTTCTGGAGAGACTGGGAGGAGTACGCCCATGGTTTTGGGAACATTTCCGGGGAATTCTGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033327-57-69,58-69,59-69-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.216 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=PU(21.0=86.3)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(15.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGCCTCAAAGACCACCAC
R:
GCCAGAATTCCCCGGAAATGT
Band lengths:
135-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types