RnoALTD0000532-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000033581 | AABR07044388.2
Description
NA
Coordinates
chr20:4485385-4485591:+
Coord C1 exon
chr20:4485385-4485397
Coord A exon
chr20:4485398-4485405
Coord C2 exon
chr20:4485495-4485591
Length
8 bp
Sequences
Splice sites
5' ss Seq
CTGGTGGGT
5' ss Score
6.29
3' ss Seq
TGGCCCCACCTGCTTTCCAGGTG
3' ss Score
9.18
Exon sequences
Seq C1 exon
ACTGACGGAGGAG
Seq A exon
GTTGGCTG
Seq C2 exon
GTGTTCCAGCGCCGCATGGACGGACAGACAGACTTCTGGAGAGACTGGGAGGAGTACGCCCATGGTTTCGGGAACATCTCCAGGGAATTCTGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033581-48-59,49-59-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]