MmuALTD1021238-4/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000033825 | Tpsb2
Description
tryptase beta 2 [Source:MGI Symbol;Acc:MGI:96942]
Coordinates
chr17:25366760-25367311:+
Coord C1 exon
chr17:25366760-25366810
Coord A exon
chr17:25366811-25366925
Coord C2 exon
chr17:25367046-25367311
Length
115 bp
Sequences
Splice sites
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
3' ss Seq
GCATGATTATACTCTTCTAGGCA
3' ss Score
6.06
Exon sequences
Seq C1 exon
GCCCAGCCAATCAGCGAGTGGGCATCGTGGGAGGACATGAGGCTTCTGAGA
Seq A exon
GTAAGTGGCCCTGGCAGGTGAGCCTGAGATTTAAATTAAACTACTGGATACATTTCTGCGGAGGTTCTCTCATCCATCCACAGTGGGTGCTCACTGCGGCACACTGTGTGGGACC
Seq C2 exon
GCACATCAAAAGCCCACAGCTCTTCCGGGTGCAGCTTCGTGAGCAGTATCTATACTATGGGGACCAGCTCCTCTCTTTGAACAGGATCGTGGTGCACCCCCACTATTACACGGCCGAGGGTGGGGCAGACGTTGCCCTGCTGGAGCTTGAGGTCCCTGTGAATGTCTCTACCCATCTCCACCCCATATCCCTGCCCCCTGCCTCGGAGACCTTCCCCCCAGGGACATCGTGCTGGGTGACAGGCTGGGGCGACATTGATAATGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033825-1-1,2-1,3-1,4-1-4/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.8=83.9)
A:
NA
C2:
PF0008921=Trypsin=FE(37.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCAATCAGCGAGTGGG
R:
GCAGGGATATGGGGTGGAGAT
Band lengths:
242-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types