RnoALTD0031690-3/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000018611 | Tpsb2
Description
tryptase beta 2 [Source:RGD Symbol;Acc:3065]
Coordinates
chr10:14723113-14723670:+
Coord C1 exon
chr10:14723113-14723163
Coord A exon
chr10:14723164-14723278
Coord C2 exon
chr10:14723405-14723670
Length
115 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
GCAGGATTTTACTCCTCTAGGCA
3' ss Score
4.86
Exon sequences
Seq C1 exon
GCCCAGTCAAGCAGCGAGTGGGCATTGTGGGAGGACGAGAGGCTTCTGAAA
Seq A exon
GTAAGTGGCCCTGGCAGGTGAGCCTGAGATTTAAATTCAGCTTCTGGATGCATTTCTGTGGCGGCTCCCTCATTCACCCACAGTGGGTGCTCACTGCGGCACACTGTGTGGGACT
Seq C2 exon
GCACATCAAAAGCCCAGAGCTCTTCCGTGTACAGCTTCGTGAGCAGTATCTATACTATGCGGACCAGCTACTGACTGTGAACCGGACCGTTGTGCACCCCCACTACTACACAGTCGAGGATGGGGCAGACATTGCCCTGCTGGAGCTTGAGAACCCTGTGAATGTCTCCACCCATATCCACCCCATATCCCTGCCCCCTGCCTCGGAGACCTTCCCCTCGGGGACTTCTTGCTGGGTAACAGGCTGGGGCGACATTGATAGTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018611-1-1,2-1,3-1-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.8=83.9)
A:
NA
C2:
PF0008921=Trypsin=FE(37.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCAAGCAGCGAGTGGG
R:
GGCAGGGATATGGGGTGGATA
Band lengths:
243-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]