MmuALTD1022081-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000034949 | Zfr2
Description
zinc finger RNA binding protein 2 [Source:MGI Symbol;Acc:MGI:2143792]
Coordinates
chr10:81249051-81249260:+
Coord C1 exon
chr10:81249051-81249071
Coord A exon
chr10:81249072-81249078
Coord C2 exon
chr10:81249165-81249260
Length
7 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
3' ss Seq
AACTGTGTCTCCTCCCCAAGGCT
3' ss Score
6.29
Exon sequences
Seq C1 exon
AGCCCTCCGCCATGCTAAGTG
Seq A exon
GTTCCAG
Seq C2 exon
GCTCGAGCCAGCGGCCTGCAGCCGTGCGTGATTGTCATCAGGGTTCTGAGGGAGCTGTGCCGCTGCCTGCCTCCCTGGGGGGCCCTGCCTGCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034949-27-30,28-30-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.231 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(12.6=100)
A:
NA
C2:
PF075289=DZF=FE(12.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCTCCGCCATGCTAA
R:
CGGCACAGCTCCCTCAGAA
Band lengths:
83-90
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types