HsaALTD1009942-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000105278 | ZFR2
Description
zinc finger RNA binding protein 2 [Source:HGNC Symbol;Acc:HGNC:29189]
Coordinates
chr19:3810750-3811366:-
Coord C1 exon
chr19:3811282-3811366
Coord A exon
chr19:3811272-3811281
Coord C2 exon
chr19:3810750-3810845
Length
10 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
3' ss Seq
CGTGTGCTTCTCCCCCGAAGGCT
3' ss Score
8.24
Exon sequences
Seq C1 exon
GTGTGGAGGAGCCTCAGGCTGATGCAGGTGATGTCCTGAGCCCCAAGAAGTGCCTCGAGTCCCTGGCCGCCCTCCGTCATGCCAG
Seq A exon
GTGGTTTCAG
Seq C2 exon
GCTCGAGCCAGCGGCCTGCAGCCATGCGTGATCGTCATCAGGGTCCTGAGGGACCTCTGCCGGCGTGTGCCCACCTGGGGGGCCCTGCCAGCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105278-32-42,33-42-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.312 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(12.6=100)
A:
NA
C2:
PF075289=DZF=FE(12.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGTCCTGAGCCCCAAGAA
R:
CCTGATGACGATCACGCATGG
Band lengths:
99-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains