HsaEX0072703 @ hg38
Exon Skipping
Gene
ENSG00000105278 | ZFR2
Description
zinc finger RNA binding protein 2 [Source:HGNC Symbol;Acc:HGNC:29189]
Coordinates
chr19:3810750-3813958:-
Coord C1 exon
chr19:3813820-3813958
Coord A exon
chr19:3811272-3811369
Coord C2 exon
chr19:3810750-3810845
Length
98 bp
Sequences
Splice sites
3' ss Seq
CCTCGAGGTTTTTCTTCTAGAAG
3' ss Score
5.74
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
Exon sequences
Seq C1 exon
ATGGTGACCGAGGATGAGTATGAGGTCTCCTCCGACCCTGAAGCCAACATTGTCATCTCCTCCTGTGAGGAGCCCAGGATGCAGGTCACCATATCTGTCACCTCACCTCTGATGCGGGAGGACCCCTCCACAGACCCAG
Seq A exon
AAGGTGTGGAGGAGCCTCAGGCTGATGCAGGTGATGTCCTGAGCCCCAAGAAGTGCCTCGAGTCCCTGGCCGCCCTCCGTCATGCCAGGTGGTTTCAG
Seq C2 exon
GCTCGAGCCAGCGGCCTGCAGCCATGCGTGATCGTCATCAGGGTCCTGAGGGACCTCTGCCGGCGTGTGCCCACCTGGGGGGCCCTGCCAGCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105278_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.426 A=0.312 C2=0.000
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(18.6=100)
A:
PF075289=DZF=FE(12.6=100)
C2:
PF075289=DZF=FE(12.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGACCGAGGATGAGTATGA
R:
CCTGATGACGATCACGCATGG
Band lengths:
180-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development