MmuEX0053770 @ mm10
Exon Skipping
Gene
ENSMUSG00000034949 | Zfr2
Description
zinc finger RNA binding protein 2 [Source:MGI Symbol;Acc:MGI:2143792]
Coordinates
chr10:81248390-81249796:+
Coord C1 exon
chr10:81248390-81248528
Coord A exon
chr10:81248984-81249078
Coord C2 exon
chr10:81249685-81249796
Length
95 bp
Sequences
Splice sites
3' ss Seq
TAGGATTCTATCCCTTCTAGGAC
3' ss Score
8.16
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
Exon sequences
Seq C1 exon
ATAGTGGCAGAAGACAAGTACGAGGTCTCATCTGACCATGACGCCAACATTGTTATCTCAGCCTGTGTGGAGCCTGGGGTGAAGGTCACCGTGTCTGCCACCTCACCTCTGATGCGGGAAGATCCCTCTGTAAAACAAG
Seq A exon
GACAGCAAGACGCTCTGTCCGACCCAGAGGACGTCTTAGACCGGGAGAGGTGCCTTGAGACCCTGGCAGCCCTCCGCCATGCTAAGTGGTTCCAG
Seq C2 exon
GCCATGGAACTGCTGGTGGAGAAAGTTCTGAGCTCTGCACCCCGGCCCCTGAGCCCAGGGGATGCCATGCGTCGGGTCCTGGAGTATGTGGCCACAGGTGCGCTCCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034949_MULTIEX2-1/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.279 A=0.231 C2=0.053
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(18.6=100)
A:
PF075289=DZF=FE(12.6=100)
C2:
PF075289=DZF=FE(15.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCTCAGCCTGTGTGGAGCC
R:
CTGTGGCCACATACTCCAGGA
Band lengths:
183-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types