DreEX6097254 @ danRer10
Exon Skipping
Gene
ENSDARG00000071683 | zfr2
Description
zinc finger RNA binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-070705-184]
Coordinates
chr22:4675706-4681981:-
Coord C1 exon
chr22:4681834-4681981
Coord A exon
chr22:4678000-4678085
Coord C2 exon
chr22:4675706-4675801
Length
86 bp
Sequences
Splice sites
3' ss Seq
CCCCACATGTGTTCCTGTAGTGT
3' ss Score
6.98
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
ACCTTTTCTGAAGATCAGTATGAGGTGCAGGTACACCCTGAGGAAGCCAACATCGTCATTTTTTCAAGCAAGGAACCAAAAATGCAGGTCACCATCTCTCTTACCTCACCAGTGATGCGCGAAGACCCCGTCCCGAACATGGAGAAAG
Seq A exon
TGTCAGAGAAAGACCCTCCGGATCTTCTGAACAGGATCAAGTGCCTTGAGTATTTAGCGGCTCTGCGACATGCTAAATGGTTTCAG
Seq C2 exon
GCTCGGGCCAATGGACTTCAGTCTTGCGTCATCATTATTCGGGTTCTGCGGGATCTCTGCCAGCGCATACCAACATGGGGAAAGATGCCAAACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071683-'24-21,'24-20,25-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.230 A=0.153 C2=0.000
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(19.8=100)
A:
PF075289=DZF=FE(11.7=100)
C2:
PF075289=DZF=FE(13.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAGGAAGCCAACATCGTC
R:
AGATCCCGCAGAACCCGAATA
Band lengths:
168-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]