RnoEX0101813 @ rn6
Exon Skipping
Gene
ENSRNOG00000020416 | Zfr2
Description
zinc finger RNA binding protein 2 [Source:RGD Symbol;Acc:1304737]
Coordinates
chr7:11337962-11338808:-
Coord C1 exon
chr7:11338670-11338808
Coord A exon
chr7:11338147-11338214
Coord C2 exon
chr7:11337962-11338057
Length
68 bp
Sequences
Splice sites
3' ss Seq
AGACTCTCTGTCTGACCCAGAGG
3' ss Score
5.13
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
Exon sequences
Seq C1 exon
ATAGTGGCAGAGGACAAGTACGAGGTCTCATCTGACCATGACGCCAACATTGTTATCTCGGCCTGTGTGGAGCCTGGGGTGAAGGTCACCGTGTCTGCCACCTCACCTCTGATGCGGGAAGACCCTTCCGTAAAACAAG
Seq A exon
AGGACATCCTGGACCGGGAGAGGTGCCTCGAGACCCTGGCAGCCCTCCGCCATGCAAAGTGGTTCCAG
Seq C2 exon
GCTCGAGCCAGCGGCCTGCAGCCATGTGTGATTGTTATCCGAGTTCTGAGGGATCTGTGCCGCTGCCTGCCCCCCTGGGGGGCCCTGCCGGCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020416-'22-26,'22-25,23-26
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.213 A=0.188 C2=0.000
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(18.6=100)
A:
PF075289=DZF=FE(12.6=100)
C2:
PF075289=DZF=FE(12.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTGACCATGACGCCAACA
R:
GCACAGATCCCTCAGAACTCG
Band lengths:
171-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]