HsaEX0072703 @ hg19
Exon Skipping
Gene
ENSG00000105278 | ZFR2
Description
zinc finger RNA binding protein 2 [Source:HGNC Symbol;Acc:29189]
Coordinates
chr19:3810748-3813956:-
Coord C1 exon
chr19:3813818-3813956
Coord A exon
chr19:3811270-3811364
Coord C2 exon
chr19:3810748-3810843
Length
95 bp
Sequences
Splice sites
3' ss Seq
CGAGGTTTTTCTTCTAGAAGGTG
3' ss Score
2.06
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
Exon sequences
Seq C1 exon
ATGGTGACCGAGGATGAGTATGAGGTCTCCTCCGACCCTGAAGCCAACATTGTCATCTCCTCCTGTGAGGAGCCCAGGATGCAGGTCACCATATCTGTCACCTCACCTCTGATGCGGGAGGACCCCTCCACAGACCCAG
Seq A exon
GTGTGGAGGAGCCTCAGGCTGATGCAGGTGATGTCCTGAGCCCCAAGAAGTGCCTCGAGTCCCTGGCCGCCCTCCGTCATGCCAGGTGGTTTCAG
Seq C2 exon
GCTCGAGCCAGCGGCCTGCAGCCATGCGTGATCGTCATCAGGGTCCTGAGGGACCTCTGCCGGCGTGTGCCCACCTGGGGGGCCCTGCCAGCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105278-'16-18,'16-17,17-18
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.426 A=0.312 C2=0.000
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(18.6=100)
A:
PF075289=DZF=FE(12.6=100)
C2:
PF075289=DZF=FE(12.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGACCGAGGATGAGTATGA
R:
CCTGATGACGATCACGCATGG
Band lengths:
180-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)