MmuALTD1022407-2/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000035459 | Stab2
Description
stabilin 2 [Source:MGI Symbol;Acc:MGI:2178743]
Coordinates
chr10:86866611-86867237:-
Coord C1 exon
chr10:86867170-86867237
Coord A exon
chr10:86867148-86867169
Coord C2 exon
chr10:86866611-86866757
Length
22 bp
Sequences
Splice sites
5' ss Seq
GTCGTGAGT
5' ss Score
7.82
3' ss Seq
TCTCTCTCTCTCTCTCTCAGGGA
3' ss Score
13.06
Exon sequences
Seq C1 exon
GCTTTAGCTTCAGACCTCCCCAGGTCTGCTTCCTGGAAGACCCTGCAGGGTTCCGAGCTGAGTGTGAG
Seq A exon
GTGTGGAACTGGCAGTGATGTC
Seq C2 exon
GGAGAGCTCTTTCTAAATGGACAAATGTGCAGGATTATACAGCGGAGACTCTTGTTTGACGGAGGTGTGGCCTATGGCATTGACTGCCTGCTAATGGATCCTACCGAAGGTGGCCGATGTGACACTTTTACTACCTTCAATATTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035459-74-80,75-80,76-80-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=FE(21.8=100)
A:
NA
C2:
PF0246917=Fasciclin=PD(24.1=65.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCTTCCTGGAAGACCCTG
R:
CGTCAAACAAGAGTCTCCGCT
Band lengths:
105-127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types