RnoALTD0029434-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000038948 | Stab2
Description
stabilin 2 [Source:RGD Symbol;Acc:628822]
Coordinates
chr7:27394954-27395726:-
Coord C1 exon
chr7:27395659-27395726
Coord A exon
chr7:27395637-27395658
Coord C2 exon
chr7:27394954-27395100
Length
22 bp
Sequences
Splice sites
5' ss Seq
ATCGTGAGT
5' ss Score
8.88
3' ss Seq
TCTCTCTCTCTCTCTCTCAGGGT
3' ss Score
13.24
Exon sequences
Seq C1 exon
GCTTTAGCTTCAGACCTCCCCAGGTCTGCTTCCTGGAAGACCCTGCAAGGCTCAGAGCTGAGTGTGAG
Seq A exon
GTGTGGAACTGGCAGTGACATC
Seq C2 exon
GGTGAGCTCTTTCTAAACGAACAAATGTGCAGGATCATACAACGGGGACTCTTGTTTGACGTGGGTGTGGCCTATGGCATTGACTGCCTACTCATGGATCCTACCCTAGGTGGCCGATGTGACACTTTTACTACCTTCGATATTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000038948-68-65,69-65-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=FE(21.8=100)
A:
NA
C2:
PF0246917=Fasciclin=PD(24.1=65.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGCTTCAGACCTCCCCAGG
R:
CCCCGTTGTATGATCCTGCAC
Band lengths:
112-134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]