MmuALTD1022975-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000036333 | Kidins220
Description
kinase D-interacting substrate 220 [Source:MGI Symbol;Acc:MGI:1924730]
Coordinates
chr12:25047894-25051226:+
Coord C1 exon
chr12:25047894-25047926
Coord A exon
NA
Coord C2 exon
chr12:25051095-25051226
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
ATTTCCCTTGACTTATCTAGGCA
3' ss Score
7.25
Exon sequences
Seq C1 exon
CTGTGTGACTCTGGGTTTAACAAACAGAGACAG
Seq A exon
NA
Seq C2 exon
GCATCCGTCCCTGCCACAGGCACCTCTCTGTTACTGAGTTCAATGACTGTGGATATCGTGTGTGAGAAACTGAGACAGATAGAAGGGCTGGACCAGGGCATGCTGCCTCAGTATTGCACAACCATCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036333-58-54,59-54-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=NA C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTGACTCTGGGTTTAACA
R:
TTTTTGATGGTTGTGCAATACTGAGG
Band lengths:
164-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types