RnoALTD0015333-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000023176 | Kidins220
Description
kinase D-interacting substrate 220 [Source:RGD Symbol;Acc:619949]
Coordinates
chr6:44312350-44314241:+
Coord C1 exon
chr6:44312350-44312382
Coord A exon
NA
Coord C2 exon
chr6:44314110-44314241
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
ATTTCCCTTGACTTATCTAGGCA
3' ss Score
7.25
Exon sequences
Seq C1 exon
CCGTGTGACTCTGGGTTTAACAAACAGAGACAG
Seq A exon
NA
Seq C2 exon
GCAACCGTCCCTGCCACAGGCAGCTCACTGTTACTGAGTTCAATGACCGTGGATGTCGTATGTGAGAAACTGAGACAGATAGAAGGGCTGGACCAGAGCATGATGCCTCAGTACTGCACAACAATCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023176-50-45,51-45-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.773 A=NA C2=0.040
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGTGACTCTGGGTTTAACA
R:
TTTCTCACATACGACATCCACGG
Band lengths:
102-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]