RnoALTD0015333-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000023176 | Kidins220
Description
kinase D-interacting substrate 220 [Source:RGD Symbol;Acc:619949]
Coordinates
chr6:44312350-44314241:+
Coord C1 exon
chr6:44312350-44312382
Coord A exon
chr6:44312383-44312397
Coord C2 exon
chr6:44314110-44314241
Length
15 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAA
5' ss Score
5.07
3' ss Seq
ATTTCCCTTGACTTATCTAGGCA
3' ss Score
7.25
Exon sequences
Seq C1 exon
CCGTGTGACTCTGGGTTTAACAAACAGAGACAG
Seq A exon
GTACAGAAACTCCAG
Seq C2 exon
GCAACCGTCCCTGCCACAGGCAGCTCACTGTTACTGAGTTCAATGACCGTGGATGTCGTATGTGAGAAACTGAGACAGATAGAAGGGCTGGACCAGAGCATGATGCCTCAGTACTGCACAACAATCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023176-50-45,51-45-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.773 A=NA C2=0.040
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGTGACTCTGGGTTTAACA
R:
TTTCTCACATACGACATCCACGG
Band lengths:
102-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]