RnoEX6028353 @ rn6
Exon Skipping
Gene
ENSRNOG00000023176 | Kidins220
Description
kinase D-interacting substrate 220 [Source:RGD Symbol;Acc:619949]
Coordinates
chr6:44302889-44314241:+
Coord C1 exon
chr6:44302889-44303112
Coord A exon
chr6:44312350-44312382
Coord C2 exon
chr6:44314110-44314241
Length
33 bp
Sequences
Splice sites
3' ss Seq
GTTTTATTCCTTCCTTAAAGCCG
3' ss Score
6.93
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
ATGTCCGAGCTGCAAGAGAGCAGATCAACATAGGAGGCCTGGCCTATCCCCCGCTCCCTCTGCACGAAGGCCCTCCTCGGCCACCTTCTGGGTACAGTCAGCCTGCATCTGTCTGCTCTTCAGCATCTTTCAACGGGCCGTTCCCAGGCGGGGTTGTGTCCCCACAGCCCCACAGCAGTTACTACAGCGGCTTGTCCGGACCCCAGCACCCCTTCTACAACAGG
Seq A exon
CCGTGTGACTCTGGGTTTAACAAACAGAGACAG
Seq C2 exon
GCAACCGTCCCTGCCACAGGCAGCTCACTGTTACTGAGTTCAATGACCGTGGATGTCGTATGTGAGAAACTGAGACAGATAGAAGGGCTGGACCAGAGCATGATGCCTCAGTACTGCACAACAATCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023176-'44-45,'44-44,50-45=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.320 A=0.773 C2=0.040
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCACCCCTTCTACAACAGG
R:
GCTCTGGTCCAGCCCTTCTAT
Band lengths:
120-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]