BtaEX0019351 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007963 | KIDINS220
Description
kinase D-interacting substrate, 220kDa [Source:HGNC Symbol;Acc:HGNC:29508]
Coordinates
chr11:88537496-88549492:+
Coord C1 exon
chr11:88537496-88537552
Coord A exon
chr11:88543821-88543853
Coord C2 exon
chr11:88549364-88549492
Length
33 bp
Sequences
Splice sites
3' ss Seq
GTTTTATTCCTTTCTTAAAGCCG
3' ss Score
6.66
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GAAGTTATCAAGGAGGATGCTGCTGAGGGCCTTTCTTCACCCACAGACTCCTCGAGG
Seq A exon
CCGTGTGACTCTGGGTTTAACAAACAGAGACAG
Seq C2 exon
GGATCAGGCCCAGCCTCAGGCACAATACCACTGAATTCGATGAACGTGGATGCAGTTTGTGAGAAACTGAAACAAATTGAAGGGCTGGACCAGAGCATGCTGCCTCAGTACTGTGCAACCATCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007963_MULTIEX1-3/4=2-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.209
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0053625=SAM_1=PU(49.2=69.8)
Main Inclusion Isoform:
ENSBTAT00000061437fB3657
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTTTCTTCACCCACAGAC
R:
TGGTCCAGCCCTTCAATTTGT
Band lengths:
122-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development