GgaEX0024220 @ galGal3
Exon Skipping
Gene
ENSGALG00000016409 | KIDINS220
Description
NA
Coordinates
chr3:98749721-98757000:-
Coord C1 exon
chr3:98756944-98757000
Coord A exon
chr3:98752788-98752820
Coord C2 exon
chr3:98749721-98749867
Length
33 bp
Sequences
Splice sites
3' ss Seq
GTTTTGTCCTTTCCTCAAAGCTG
3' ss Score
7.49
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GATGTTATCAAGGAGGATGCTGATGAGGGGCTTTCTTCACCCACAGACCCCTCAATG
Seq A exon
CTGTGTAAGTCTGGGTTAAGCAGACCAAGACAG
Seq C2 exon
GGAGGAGGAGCAGGTGCAGGAGCAACCACAGGAGTTTCACATGTCTCTCTGAGCACAATGAGTGTGGAAGCTGTATGTGAGAAGCTAAAGCAGATAGACGGTCTGGACCAGAGCATGCTGCCTCAGTACTCTGCAATTATAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016409-'36-36,'36-35,37-36
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.273 C2=0.157
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0053625=SAM_1=PU(52.5=63.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGCTGATGAGGGGCTTTC
R:
GCTTCTCACATACAGCTTCCACA
Band lengths:
128-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]