GgaEX0024219 @ galGal3
Exon Skipping
Gene
ENSGALG00000016409 | KIDINS220
Description
NA
Coordinates
chr3:98749721-98758033:-
Coord C1 exon
chr3:98757926-98758033
Coord A exon
chr3:98756944-98757000
Coord C2 exon
chr3:98749721-98749867
Length
57 bp
Sequences
Splice sites
3' ss Seq
TAATATTTTGTTGTTGCTAGGAT
3' ss Score
7.08
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
Exon sequences
Seq C1 exon
CCATTCTTTGCCCCATGTCTTTACATGCCAAGGTATTACCCTGGCAGTTCTCATCTCATCTCACGTCCACTAAAAACGAGTTTGTCCAGAGATCAGAGCAATGGCCTA
Seq A exon
GATGTTATCAAGGAGGATGCTGATGAGGGGCTTTCTTCACCCACAGACCCCTCAATG
Seq C2 exon
GGAGGAGGAGCAGGTGCAGGAGCAACCACAGGAGTTTCACATGTCTCTCTGAGCACAATGAGTGTGGAAGCTGTATGTGAGAAGCTAAAGCAGATAGACGGTCTGGACCAGAGCATGCTGCCTCAGTACTCTGCAATTATAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016409_MULTIEX1-2/3=1-3
Average complexity
C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.287 A=1.000 C2=0.157
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0053625=SAM_1=PU(52.5=63.3)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAGATCAGAGCAATGGCC
R:
GGTCCAGACCGTCTATCTGCT
Band lengths:
132-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]