MmuEX0025397 @ mm9
Exon Skipping
Gene
ENSMUSG00000036333 | Kidins220
Description
kinase D-interacting substrate 220 [Source:MGI Symbol;Acc:MGI:1924730]
Coordinates
chr12:25723189-25736091:+
Coord C1 exon
chr12:25723189-25723415
Coord A exon
chr12:25726111-25726167
Coord C2 exon
chr12:25735960-25736091
Length
57 bp
Sequences
Splice sites
3' ss Seq
CTCCTGTTTTATGTTGCTAGGAG
3' ss Score
6.91
5' ss Seq
AGGGTAATG
5' ss Score
5.98
Exon sequences
Seq C1 exon
ATGTTCGAGCTGCAAGAGAACAGATCAACATAGGAGGCCTTGCGTATCCCCCGCTCCCTCTGCACGAAGCCCCTCCTCGGCCTCCTTCTGGGTACAGTCAGCCTGCATCTGTCTGCTCCTCCTCAGCATCTTTCAATGGGCCGTTCCCAGGCGGCGTTGTGTCCCCACAGCCCCACAGCAGCTACTACAGCGGCCTGTCGGGACCCCAGCACCCTTTCTACAACAGG
Seq A exon
GAGGTAATCAAGGAGGATGCTGCTGAGGGCCTTCCTTCACCCACAGCCTCCTCGAGG
Seq C2 exon
GCATCCGTCCCTGCCACAGGCACCTCTCTGTTACTGAGTTCAATGACTGTGGATATCGTGTGTGAGAAACTGAGACAGATAGAAGGGCTGGACCAGGGCATGCTGCCTCAGTATTGCACAACCATCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036333_MULTIEX1-2/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.311 A=1.000 C2=0.027
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAGCACCCTTTCTACAAC
R:
TTGTGCAATACTGAGGCAGCA
Band lengths:
145-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: