HsaEX0034364 @ hg38
Exon Skipping
Gene
ENSG00000134313 | KIDINS220
Description
kinase D interacting substrate 220 [Source:HGNC Symbol;Acc:HGNC:29508]
Coordinates
chr2:8736868-8748000:-
Coord C1 exon
chr2:8747887-8748000
Coord A exon
chr2:8747145-8747201
Coord C2 exon
chr2:8736868-8736999
Length
57 bp
Sequences
Splice sites
3' ss Seq
CTCCTGTTTTGTGTTGTTAGGAA
3' ss Score
7.43
5' ss Seq
AGGGTAATG
5' ss Score
5.98
Exon sequences
Seq C1 exon
CCATTCTTTGCCCCATACCTTTACACGCCAAGGTATTACCCTGGCGGCTCCCAACATCTCATCTCACGTCCATCAGTAAAAACGAGTTTGCCCAGAGATCAGAACAATGGCCTA
Seq A exon
GAAGTTATCAAGGAGGATGCTGCTGAGGGGCTTTCTTCACCCACAGACTCCTCGAGG
Seq C2 exon
GGGTCAGGCCCAGCCCCAGGCCCAGTGGTATTACTGAATTCACTGAATGTGGATGCAGTATGTGAGAAGCTGAAACAAATAGAAGGGCTGGACCAGAGTATGCTGCCTCAGTATTGTACCACGATCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134313_MULTIEX2-3/4=2-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.445 A=1.000 C2=0.118
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCCCCATACCTTTACACGC
R:
AGTAATACCACTGGGCCTGGG
Band lengths:
142-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development