GgaEX0024219 @ galGal4
Exon Skipping
Gene
ENSGALG00000016409 | KIDINS220
Description
kinase D-interacting substrate, 220kDa [Source:HGNC Symbol;Acc:HGNC:29508]
Coordinates
chr3:95449336-95457648:-
Coord C1 exon
chr3:95457541-95457648
Coord A exon
chr3:95456559-95456615
Coord C2 exon
chr3:95449336-95449482
Length
57 bp
Sequences
Splice sites
3' ss Seq
TAATATTTTGTTGTTGCTAGGAT
3' ss Score
7.08
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
Exon sequences
Seq C1 exon
CCATTCTTTGCCCCATGTCTTTACATGCCAAGGTATTACCCTGGCAGTTCTCATCTCATCTCACGTCCACTAAAAACGAGTTTGTCCAGAGATCAGAGCAATGGCCTA
Seq A exon
GATGTTATCAAGGAGGATGCTGATGAGGGGCTTTCTTCACCCACAGACCCCTCAATG
Seq C2 exon
GGAGGAGGAGCAGGTGCAGGAGCAACCACAGGAGTTTCACATGTCTCTCTGAGCACAATGAGTGTGGAAGCTGTATGTGAGAAGCTAAAGCAGATAGACGGTCTGGACCAGAGCATGCTGCCTCAGTACTCTGCAATTATAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016409_MULTIEX1-3/4=2-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.292 A=1.000 C2=0.194
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0053625=SAM_1=PU(52.5=63.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAGATCAGAGCAATGGCC
R:
GGTCCAGACCGTCTATCTGCT
Band lengths:
132-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]