GgaEX0024218 @ galGal4
Exon Skipping
Gene
ENSGALG00000016409 | KIDINS220
Description
kinase D-interacting substrate, 220kDa [Source:HGNC Symbol;Acc:HGNC:29508]
Coordinates
chr3:95449336-95462232:-
Coord C1 exon
chr3:95462006-95462232
Coord A exon
chr3:95457541-95457648
Coord C2 exon
chr3:95449336-95449482
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTTATTTTTTTTTTCCATAGCCA
3' ss Score
9.61
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
Exon sequences
Seq C1 exon
ATGTTCGTGCTGCAAGAGATCAAATGAACATAGGAGGACTTCCTTATCCCACATTGCCTTTACATGAGGCACCTGCCAGAGCAGCGTCTCTTTTCAGTCAGCCTTCATCAGCCTGCTCTTCTACAACCTCTTTCAATGGACCTTTCAACAGTGGAGTTCTATCACCCCAACCTCACAGCAGTTACTATAGTGGTATGACAGGACCTCAGCATCCGTTCTACAATCGG
Seq A exon
CCATTCTTTGCCCCATGTCTTTACATGCCAAGGTATTACCCTGGCAGTTCTCATCTCATCTCACGTCCACTAAAAACGAGTTTGTCCAGAGATCAGAGCAATGGCCTA
Seq C2 exon
GGAGGAGGAGCAGGTGCAGGAGCAACCACAGGAGTTTCACATGTCTCTCTGAGCACAATGAGTGTGGAAGCTGTATGTGAGAAGCTAAAGCAGATAGACGGTCTGGACCAGAGCATGCTGCCTCAGTACTCTGCAATTATAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016409_MULTIEX1-2/4=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.151 A=0.292 C2=0.194
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0053625=SAM_1=PU(52.5=63.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCAGCCTTCATCAGCCTG
R:
GGTCCAGACCGTCTATCTGCT
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]