BtaEX0019349 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007963 | KIDINS220
Description
kinase D-interacting substrate, 220kDa [Source:HGNC Symbol;Acc:HGNC:29508]
Coordinates
chr11:88534104-88549492:+
Coord C1 exon
chr11:88534104-88534330
Coord A exon
chr11:88536654-88536767
Coord C2 exon
chr11:88549364-88549492
Length
114 bp
Sequences
Splice sites
3' ss Seq
GTCACGTGTTTTCTCCATAGCCA
3' ss Score
8.91
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
Exon sequences
Seq C1 exon
ATGTTCGTGCTGCAAGAGACCAGATTAATATCGGAGGACTTGCGTATCCCCCGCTACCTCTGCACGAGCCTCCCCCTCGACCGCCGTCCGGCTACAGTCAGCCAGCGTCTGTCTGCTCTTCGTCCACCTCCTTCAATGGGCCATTCGGGGGAGGGGTTGTGTCGCCGCAGCCTCATAGCAGCTACTACAGCGGCATGACAGGACCCCAGCACCCCTTCTACAACAGG
Seq A exon
CCATTCTTTGCCCCCTACCTTTACACGCCAAGGTACTGCCCTGGCGGCTCCCACCATCTCATCTCACGTCCATCAGTAAAAACGAATTTGCCCAGAGATCAGAGCAATGGCCTA
Seq C2 exon
GGATCAGGCCCAGCCTCAGGCACAATACCACTGAATTCGATGAACGTGGATGCAGTTTGTGAGAAACTGAAACAAATTGAAGGGCTGGACCAGAGCATGCTGCCTCAGTACTGTGCAACCATCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007963_MULTIEX1-1/4=C1-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.478 A=0.447 C2=0.209
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0053625=SAM_1=PU(49.2=69.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGTCTGCTCTTCGTCCAC
R:
ATGGTTGCACAGTACTGAGGC
Band lengths:
243-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development