MmuEX0025396 @ mm9
Exon Skipping
Gene
ENSMUSG00000036333 | Kidins220
Description
kinase D-interacting substrate 220 [Source:MGI Symbol;Acc:MGI:1924730]
Coordinates
chr12:25723189-25736091:+
Coord C1 exon
chr12:25723189-25723415
Coord A exon
chr12:25725321-25725434
Coord C2 exon
chr12:25735960-25736091
Length
114 bp
Sequences
Splice sites
3' ss Seq
TGTTACATGTTTCTCCATAGCCA
3' ss Score
9.3
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
Exon sequences
Seq C1 exon
ATGTTCGAGCTGCAAGAGAACAGATCAACATAGGAGGCCTTGCGTATCCCCCGCTCCCTCTGCACGAAGCCCCTCCTCGGCCTCCTTCTGGGTACAGTCAGCCTGCATCTGTCTGCTCCTCCTCAGCATCTTTCAATGGGCCGTTCCCAGGCGGCGTTGTGTCCCCACAGCCCCACAGCAGCTACTACAGCGGCCTGTCGGGACCCCAGCACCCTTTCTACAACAGG
Seq A exon
CCATTCTTTGCCCCATACCTTTACACGCCAAGGTATTACCCTGGCGGTTCCCAACATCTCATCTCACGTTCATCAGTAAAAACGAGTTTGCCCAGAGATCAGAACAATGGCCTA
Seq C2 exon
GCATCCGTCCCTGCCACAGGCACCTCTCTGTTACTGAGTTCAATGACTGTGGATATCGTGTGTGAGAAACTGAGACAGATAGAAGGGCTGGACCAGGGCATGCTGCCTCAGTATTGCACAACCATCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036333_MULTIEX1-1/4=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.311 A=0.395 C2=0.027
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCAGCCTGCATCTGTCTG
R:
TTGTGCAATACTGAGGCAGCA
Band lengths:
254-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: