HsaEX0034363 @ hg19
Exon Skipping
Gene
ENSG00000134313 | KIDINS220
Description
kinase D-interacting substrate, 220kDa [Source:HGNC Symbol;Acc:29508]
Coordinates
chr2:8876998-8890465:-
Coord C1 exon
chr2:8890242-8890465
Coord A exon
chr2:8888017-8888130
Coord C2 exon
chr2:8876998-8877129
Length
114 bp
Sequences
Splice sites
3' ss Seq
TGTTACATGTTTTTCCATAGCCA
3' ss Score
8.72
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
Exon sequences
Seq C1 exon
ATGTTCGTGCTGCCAGAGAGCAGATCAGTATTGGAGGACTGGCGTACCCCCCGCTCCCTCTACATGAGGGTCCTCCTAGGGCGCCATCAGGGTACAGCCAGCCCCCATCCGTGTGCTCTTCCACGTCCTTCAATGGGCCCTTCGCAGGTGGAGTGGTGTCACCACAGCCTCACAGCAGCTATTACAGCGGCATGACGGGCCCTCAGCATCCCTTCTACAACAGG
Seq A exon
CCATTCTTTGCCCCATACCTTTACACGCCAAGGTATTACCCTGGCGGCTCCCAACATCTCATCTCACGTCCATCAGTAAAAACGAGTTTGCCCAGAGATCAGAACAATGGCCTA
Seq C2 exon
GGGTCAGGCCCAGCCCCAGGCCCAGTGGTATTACTGAATTCACTGAATGTGGATGCAGTATGTGAGAAGCTGAAACAAATAGAAGGGCTGGACCAGAGTATGCTGCCTCAGTATTGTACCACGATCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134313_MULTIEX1-2/3=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.371 A=0.447 C2=0.105
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0053625=SAM_1=PU(52.6=68.2)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGCCAGAGAGCAGATCAG
R:
AGTAATACCACTGGGCCTGGG
Band lengths:
252-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)