HsaEX0034355 @ hg19
Exon Skipping
Gene
ENSG00000134313 | KIDINS220
Description
kinase D-interacting substrate, 220kDa [Source:HGNC Symbol;Acc:29508]
Coordinates
chr2:8876998-8887331:-
Coord C1 exon
chr2:8887275-8887331
Coord A exon
chr2:8880282-8880314
Coord C2 exon
chr2:8876998-8877129
Length
33 bp
Sequences
Splice sites
3' ss Seq
GTTTTATTCCTTCCTTAAAGCTG
3' ss Score
8.34
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GAAGTTATCAAGGAGGATGCTGCTGAGGGGCTTTCTTCACCCACAGACTCCTCGAGG
Seq A exon
CTGTGTGACTCTGGGTTTAACAAACAGAGACAG
Seq C2 exon
GGGTCAGGCCCAGCCCCAGGCCCAGTGGTATTACTGAATTCACTGAATGTGGATGCAGTATGTGAGAAGCTGAAACAAATAGAAGGGCTGGACCAGAGTATGCTGCCTCAGTATTGTACCACGATCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134313-'35-40,'35-37,38-40
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.921 A=1.000 C2=0.105
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0053625=SAM_1=PU(52.6=68.2)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCACCCACAGACTCCTCGAG
R:
GCATACTCTGGTCCAGCCCTT
Band lengths:
125-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)