DreEX6045734 @ danRer10
Exon Skipping
Gene
ENSDARG00000017338 | kidins220b
Description
kinase D-interacting substrate 220b [Source:ZFIN;Acc:ZDB-GENE-030131-7824]
Coordinates
chr20:29867080-29877033:+
Coord C1 exon
chr20:29867080-29867300
Coord A exon
chr20:29874609-29874638
Coord C2 exon
chr20:29876896-29877033
Length
30 bp
Sequences
Splice sites
3' ss Seq
TCCTCTCTCTCCTCAAGCAGGGT
3' ss Score
8.05
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
ATGTGCGTGCTGCCCGGGAACAGGTAAATATGGCTGGTGTCACCTATCCCACACTGCCTCTGCAGGAGGGCCGTCCCATATCAATGTACAGCCAGCAGTCCTCGGCCTGCTCCCCGACTGCCTCTTTCAACGGCCCGTATAATCCGCCAGGAGTCTCTCCTCAGCCCCACAGCGCATACTTCAGCGGCATGGCTGGACCACAACACCCCTTCTACAATAGG
Seq A exon
GGTAAAGTACCGTCTTTGAAAAAGAAGCAG
Seq C2 exon
GGCTCAGCTTCGGTGGTCTCAGGCACGCCATCAATTCTGCTCAGCTCGATGAGCACAGATGTCATCTGTGAGCGTGTCAAACTTATCGACGGTATCGATCAGAACCTGATTTCTCAGTATACAGCCACCATTAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017338-'28-29,'28-28,31-29=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.248 A=0.500 C2=0.022
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACCACAACACCCCTTCTA
R:
CCGTCGATAAGTTTGACACGC
Band lengths:
120-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]