DreALTA0015116-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000017338 | kidins220b
Description
kinase D-interacting substrate 220b [Source:ZFIN;Acc:ZDB-GENE-030131-7824]
Coordinates
chr20:29872152-29874638:+
Coord C1 exon
chr20:29872152-29872274
Coord A exon
chr20:29874606-29874608
Coord C2 exon
chr20:29874609-29874638
Length
3 bp
Sequences
Splice sites
5' ss Seq
CTTGTAAGT
5' ss Score
8
3' ss Seq
CTCTCCTCTCTCTCCTCAAGCAG
3' ss Score
7.06
Exon sequences
Seq C1 exon
CCATATTTTCCCCAACATCTTTACCAGCTGCCACGGCAGTTCACTGGCAGCTACTTCCCTGCTCATGTTCTTCACCGTCCATTCATTAAATCTGGCTATCCCAAGGACCCTAGCAGTGGACTT
Seq A exon
CAG
Seq C2 exon
GGTAAAGTACCGTCTTTGAAAAAGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017338-30-28,30-27-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=NA C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGCTCATGTTCTTCACCG
R:
CTGCTTCTTTTTCAAAGACGGT
Band lengths:
97-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]