RnoEX0046708 @ rn6
Exon Skipping
Gene
ENSRNOG00000023176 | Kidins220
Description
kinase D-interacting substrate 220 [Source:RGD Symbol;Acc:619949]
Coordinates
chr6:44302889-44314241:+
Coord C1 exon
chr6:44302889-44303112
Coord A exon
chr6:44304975-44305088
Coord C2 exon
chr6:44314110-44314241
Length
114 bp
Sequences
Splice sites
3' ss Seq
TGTTACATGTTTCTCCATAGCCA
3' ss Score
9.3
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
Exon sequences
Seq C1 exon
ATGTCCGAGCTGCAAGAGAGCAGATCAACATAGGAGGCCTGGCCTATCCCCCGCTCCCTCTGCACGAAGGCCCTCCTCGGCCACCTTCTGGGTACAGTCAGCCTGCATCTGTCTGCTCTTCAGCATCTTTCAACGGGCCGTTCCCAGGCGGGGTTGTGTCCCCACAGCCCCACAGCAGTTACTACAGCGGCTTGTCCGGACCCCAGCACCCCTTCTACAACAGG
Seq A exon
CCATTCTTTGCCCCATACCTTTACACGCCAAGGTATTACCCTGGCGGTTCCCAACATCTCATCTCACGTTCATCAGTAAAAACGAGTTTGCCCAGAGATCAGAACAATGGCCTA
Seq C2 exon
GCAACCGTCCCTGCCACAGGCAGCTCACTGTTACTGAGTTCAATGACCGTGGATGTCGTATGTGAGAAACTGAGACAGATAGAAGGGCTGGACCAGAGCATGATGCCTCAGTACTGCACAACAATCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023176_MULTIEX1-1/4=C1-C2
Average complexity
C1
Mappability confidence:
80%=100=80%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.320 A=0.355 C2=0.040
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCAGCCTGCATCTGTCTG
R:
TGCAGTACTGAGGCATCATGC
Band lengths:
248-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]