GgaINT1016170 @ galGal4
Intron Retention
Gene
ENSGALG00000016409 | KIDINS220
Description
kinase D-interacting substrate, 220kDa [Source:HGNC Symbol;Acc:HGNC:29508]
Coordinates
chr3:95456559-95457648:-
Coord C1 exon
chr3:95457541-95457648
Coord A exon
chr3:95456616-95457540
Coord C2 exon
chr3:95456559-95456615
Length
925 bp
Sequences
Splice sites
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
3' ss Seq
TAATATTTTGTTGTTGCTAGGAT
3' ss Score
7.08
Exon sequences
Seq C1 exon
CCATTCTTTGCCCCATGTCTTTACATGCCAAGGTATTACCCTGGCAGTTCTCATCTCATCTCACGTCCACTAAAAACGAGTTTGTCCAGAGATCAGAGCAATGGCCTA
Seq A exon
GTAAGTATTTTGAAGGTTAATTCACATGCTAACCTAAACAATAAGTATAGTAAATAATGTAAAGTTGTTAATGATGATGCAGTATTAAACAAGTACAAGCTCTATTTCATAAATAGTTTAAGCAAAGGTGTTATTGATATGTCATGTAAAATGTATTTTGTTTTAACTTTAGAAGCTACTGAGAGTTGAAAACAAATTCTATCATCCAGATACCGAGTTTGGAGGAGTTTAACCTTGTAATACTGGCAGGAAAACATTTCAGTCAATGTGCCAACTGTGCTGCAGTAAATAAACTGATAAAGTACAAAGTTCTAAGAAAAAGAGAATGCCAGTGATAAATTTATATTCAAATTTTATAATAATACAAATTCTGTGACATCTGGAGAAGATAAAATTACATCTCTTCATGTTGTAAAGTTTTCTACAAATAGAAAGGCCAAAGAAATAACAGCAATGTTTTAAACATCCATGTAAAACAAAATACATTTTGTCTTAAGCGTGCATTATAGCCTGGTTTTGTAAGTACATGTAATTCAACTTTATTTACCCAGTGAAAAGGAAGAGCTAACAGTCTTTTCTGGCATCCTATAGAATAATACAATTCCTATTAAGAATATTTATTTTACTGACAGATGGCTGTTCAAATGGAGTTAAGAACTAAAGAAAGCTTAAAAAAACCCCAAAAACCCACAAAACAGTGGCGGTAAAAGCCTTACTTGTCACTGCTTTAATTCTAGGATATTGATACATTGAACAAAGCTATCAAAAGGCTTTAAAATCTTCTTCTTTAATCACAAACAGAAAACAAATATGTTTCTGTCGAGTTCTGTATTATTATGAGATCATTCTCATTCATTATTTACTTCATATTTTTTGTTTAGCCCTTGATCATTTTACCCAAACCATAATATTTTGTTGTTGCTAG
Seq C2 exon
GATGTTATCAAGGAGGATGCTGATGAGGGGCTTTCTTCACCCACAGACCCCTCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016409:ENSGALT00000026464:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.292 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]