BtaINT0081470 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007963 | KIDINS220
Description
kinase D-interacting substrate, 220kDa [Source:HGNC Symbol;Acc:HGNC:29508]
Coordinates
chr11:88536654-88537552:+
Coord C1 exon
chr11:88536654-88536767
Coord A exon
chr11:88536768-88537495
Coord C2 exon
chr11:88537496-88537552
Length
728 bp
Sequences
Splice sites
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
3' ss Seq
CTCTTGTTTTGTGTTGCTAGGAA
3' ss Score
8.01
Exon sequences
Seq C1 exon
CCATTCTTTGCCCCCTACCTTTACACGCCAAGGTACTGCCCTGGCGGCTCCCACCATCTCATCTCACGTCCATCAGTAAAAACGAATTTGCCCAGAGATCAGAGCAATGGCCTA
Seq A exon
GTAAGTATAAAAAAGGGTAATTAAGTATTACAGTCAGCAATAGAAGTTTGCTTATTTCCTTTCTGTAGTAAAAGCACAACTTATTTTATAAATAGTTTCAAGAAACATAACCTATTACTAACACAAAATGTATTTTGTTTTCATTTTGGTCAGGATCTATGGAAGGAAAATGACTAGCAGCCTCAGGGAATGAATGACGAGTTGTTTACAACCAGAGTTTCTGGCCTAAAATGTATTGTTTGTTATCAAACTTTTACAACTAAACTTTTACATCTGCTTATATCTGATTTCTTTTTAAAGCACATTCATATATGGTATCTTTATCTATCTAAATATATGCTAGCCCTATGTATAAAAAGTAGCGCATATATTGGAGGAACACTTTTATTGAATAGCAGGAATTAAATAGGGCAAGGAAATTATCCAGATGTACTATTAACTCAAATCCAAAGCGAAATACATTTGGGCCTAAAATTCTACGTGTTACTGATGATAAACTTAGTTTACCAATTTAAAGAAAGACATTTCCCTGCTAATTTTTTTTTAAATTAGGAGGTAAAAGCTTTAGAACTTAAACTGTTATTTAAATTTAAAAATAATATCATTGAAAAGAGTCTGATCACATTCAGGTGTCACTGTCACATATTATTTTAGCATCCTGTTCATTCATCATCCTTGTTTGGCTCAGCCCGTCACCTTTCACCCACACTCTTGTTTTGTGTTGCTAG
Seq C2 exon
GAAGTTATCAAGGAGGATGCTGCTGAGGGCCTTTCTTCACCCACAGACTCCTCGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007963:ENSBTAT00000061437:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.447 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development