MmuINT0086559 @ mm10
Intron Retention
Gene
ENSMUSG00000036333 | Kidins220
Description
kinase D-interacting substrate 220 [Source:MGI Symbol;Acc:MGI:1924730]
Coordinates
chr12:25040456-25041302:+
Coord C1 exon
chr12:25040456-25040569
Coord A exon
chr12:25040570-25041245
Coord C2 exon
chr12:25041246-25041302
Length
676 bp
Sequences
Splice sites
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
3' ss Seq
CTCCTGTTTTATGTTGCTAGGAG
3' ss Score
6.91
Exon sequences
Seq C1 exon
CCATTCTTTGCCCCATACCTTTACACGCCAAGGTATTACCCTGGCGGTTCCCAACATCTCATCTCACGTTCATCAGTAAAAACGAGTTTGCCCAGAGATCAGAACAATGGCCTA
Seq A exon
GTAAGTATATAAAGGGGTAACTAAAATATTAATCTCATAAAAGAACATGGATACCATTAAAAGCTCTTTTTCCTTTTCCTTTCTGGAGTAAAAGAGTACAACTTACTGTATAGTTTTGAAAAACAAGCTATTACAAATATAAACTGTATGTTTTCATTTCTGGTAAATATCTATGCAAGACTAGCCATCTCAGTGACTAAACGTTGAGTTTTTACAACCAGAGATCTCTGGCTTGTAATGCAGTGTTTGCTACCAAAACTTCTCAAACTAGATCTTTATAACTGCTAATTTCTGGTATCTTTTTAAAGGGCTTGCATGTTCTCTCTCTGTGCATTTACATTGGCATTACGGCTTAGCAGATAGAGGTGCAGCACCAGGAAAGCATTCCAGTCTGCTGCAGGGAGTCTGCAGAGTGAGGTTGTTTAAACATACTATTGAGTAGAATTAATCCAAAACAAAACACATCTGTGCAAAATATAGTAGGGGCTCCTGATGATAAACTTCAAATAACTATAAAAAACAAGTTCCCTGATAACATAATTTAAGCTACATTTTAGAGTGGTGGAAGGGGAATTTCTGTCAGAGTTATCTGTGTTGTTATCTCAGCATCGTGTTCCTTCATCTTCCATGTCACTCATCCTGCCCTGTTACTCACTCTCCTGTTTTATGTTGCTAG
Seq C2 exon
GAGGTAATCAAGGAGGATGCTGCTGAGGGCCTTCCTTCACCCACAGCCTCCTCGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036333:ENSMUST00000066652:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.447 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types