GgaINT0078656 @ galGal4
Intron Retention
Gene
ENSGALG00000016409 | KIDINS220
Description
kinase D-interacting substrate, 220kDa [Source:HGNC Symbol;Acc:HGNC:29508]
Coordinates
chr3:95449336-95456615:-
Coord C1 exon
chr3:95456559-95456615
Coord A exon
chr3:95449483-95456558
Coord C2 exon
chr3:95449336-95449482
Length
7076 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
3' ss Seq
CACCTTCTTGCTTCTTGCAGGGA
3' ss Score
10.41
Exon sequences
Seq C1 exon
GATGTTATCAAGGAGGATGCTGATGAGGGGCTTTCTTCACCCACAGACCCCTCAATG
Seq A exon
GTAAATGAGTAGTCATGTGGTGTGGAAATTTTAGCATCTCATTGCTTTTTCAGCAGTAATGAGTCTGCATTAATCGTAACTGCAGTTCAACTAACACTGCATCGGTGGCTTTGGTGGGCATAGAGTAGCTGAAAACTAATGTAGTTTGTGAATGAATTTAAGAGCTAATATTTCACTTATAAGATATAGATTTTTTTTCCCCTGTAGTTTTTCCCTTGCCTTTCTCAGTAGCTGTTGTGTGTATTGTGGTAGCTAAACAGAGTGAAGAATGACAGGTGGTCATTTGTGACTTAGATTTTAGAGCAAAGTAACTTTGGTGTTTCCTGCTTTAGTCAGCATTCCTGATCCCTACTTCTTTAGCTGGTAGCGTAGAGCTGTTGCAGTTAATGCAGTATGAAGCAGCGTTCCATGGAAATAAAATAACAGGCCATAGGTTAATTGTTGAATCAGAATGCTAACACTGATATTTTCTGTGACTTGTTCTTTGTTTTAGTCTCAGTATTTGCACAAAGATGTCGTCTTTATGGGTATCTGTTTTAATTCTAACTGGGAATCAGTGGAAAGTCGTGTGGAGATACTGCCACCGAAGAGGTTATACAGTTACAATCATTTTCTTAACTATTGCTACCATTGTTGCTGTTGGCAACACTTAAAAGTTAAAGCTGCAGTTATTTTTTGTTTGTCCAGTGAATCATTACAAAAATAAGTAAATAAATCTGTGATACAGTACAATGTTAAAAAAGAAAGAAACAACCTACAAACACACAGATTCCAGAACCACTGTATTTAACTGCACATAAACTTCATTTATCAATTATGAAAATGCAATGGAGAATTTACCCTCAAGTTCTGTTTCCCAGGTCATCTTCTACCCTGAGTGAAGGGATGACTTTGAGGTAAATTTTTCTTGTAGTATAATTTTGGAGATGCTGATGTCTTCTCTGTATTTGATTTATCTCAGTATCCTGTTGTCCTCCCAGTCCTTTGCAGCTTGTCAGTGTGAGAAGAGAAAGCAGTAGAAGTATGTGTTTTTGAGTGTAAGAAAGGGACATGGGAGTGAAGAGTGGAAACTCATCTCAGGGTGAAGTAGTTCATCAGCTCCAGGAGCAGACCTGGACCTGATTGTTCCTCTGCTTGTTACCCTCAGTGTGTATCCTAAGCAGATAGGCTGCAGGTTCAAACAGTTGAAAATACTTGTGAAATTTACAAGGTCTGATTGCTGTAGGTTAGAAAATATGAGAGTTACAACGTAGGAAAGAAACTTTGATGTAATGGTAATGGAGGATTCCATTATATCCATTTTTTCAGAGTTTGCCTTACTGTGAAACTCAGTAGTACAGAGTATGAGATTATATGCTTTTTCTGAGGTTTACTCTACGTTGTCAGTGTAAAATTTTGAGTTTTTGAAGATCTCTTGGGTAGTTTACAATAATGTTGTTAATGTGTGGCATTCTGTGTGCCTGACAGGTTGCCTCACCAGGGTTTCCTCTATTCTAAAAACACTTACTTTGCACTCTTCGTTGAAAGTGCAGTGAAAGTGAGCAGTGAAAGTATTATGCTTGTTGAAGACATTGCAGTTGTCCATAGATCATAGTTACAATAATTCCATCCAGCTACTGGGTTGTTCTGAATTGATGGATCACTACCACCATATAAATGATGAAGTTTAAACTTAGATCTGAATATGCATACTGGTGCATGTAAATTAATGAAATATACTAAAAAAAATAATAAAAAGCAAAACAATCTGCATTGAGTAGTTAATGAGCACCAATGCTTCTAACTGATTTGAGGGCTGAAAACAAGAGGGGCATGCAGAATCAGAACTGAATTTCATACAAACCTAGGAAGAAGCCAGAAACATTGCAGTTCTACTATTGTGTGAAACAGAGTAAATCATTATTTTTAATGTGACAGGGCAGGAAACAGCTGCTGCAAGAGCATAACTTTTTAATACAGACCATCATTGCTACTCTTTGCATGAGCTGACAGACCTGTGCTGAGACAGCTTTGTGAACAACTGAGGCCATCTGACATTGTTGGCCATCTGACATTAGGGTAGAGTGGAAATCTAAAATTCCAAATCCTAATATTACATAAAACCAATGTAAATCTGGGTTAGCTTAATGAAAATGAGAATACACTGAGAGCGTACATCATATATAAATAATCTGGGAAGCTGTCTTTAGGGACAAAGGAATGAAATGCAGCTGGCATTCTTTGAGGACATCTTTGTTACAGAGTGCAGGAGCTCTCCATCCTTACATGTAAGAAATCAAGCAGGGGAAACAGGAAACCAGTAGGGCTGAGCAAGGACCTGCTGCTCAAACTGAGGGAAAAGAAGGACATGTACAGGGAGTGGAAGTAGGAATGTGTGGCCTGGGAAGAGAACAGGGATGCTGTCTAGACATGCAGAGACAGGATCAGGAAAGCCAAGACACAAATGGAACTGAACTTGGTGATGAGGGATATAAAAAGTAATAAGAAGGGATTCTGCAGGTACATGAAGTCAGAAAAGAAAGGCTGGGTAGAGTGTACCCCCTCTGATAAATTAGAAGGGAGAACTGGCTGCAGCACGCCTGGAGAAGGCTGAGATAGTCAGTTCTTTGCCTCAGTCCTCACGCACAGTGTCCCTGAACCTCTGGATGAGGTTGGGAGAACAAAATCCCTCTCACTGTAGGCAAAGAGCAAGTTCAAGACTACCTGGTAAGACTGAATGTGGACAAGTCTATGCATTCCAGGGTCCTGAATGAACTGGCTGATGTAGTTGTTGAGCTACTCTCCATCATATGTGAAAAGTCGTGGCTGTCAGGTGAAGTCTCTGGTGACTGGAAAAAGGGAAACATCACTCCCATTTTTAAGAAGGGTAGAAAGGAGCTCCTGGGGAGTGACAGGACAGTGGGCCTCATGTCCATGCCTGGGAAGATCATGGAGCAGATCCTCCTGTAAGCTATGTTAAAGCACTTGTGACGTGTGAAGGTGATCTGAGACAGCCAGCAGAGGTTCACCAAGGGCAGACTGTGCCTGACAGTCTGGTGGCATTCTTCAATGGAGTGATGGCATCTGTGGACAAAGGAAGGGCAACTTATATCATCTACTTGGACTTGTGCAAGACTGATACAGACCCACGCAACATTCTTATCTCTAAGTGGGAGAAAGATGGATTTGGAAGGTGAGCTTAATCATTGGGTAAGGAATTAGTTGGAAGGTCACAGTCAGAGGGTTGTGGTCAGCATATCTGTGTCCAAATGGAAGGTGGTGATGAGTGGTGTCCCTCAGGGTTCTGTCCTGGGACTTTGTGCTTTTCAAAATCTTCATCAGTGACATAGGCAGTGGGATTGAGTGCATCCTCAGCAAATACACTGATGACACCAAGCTGGATGGTGCAGTTGATGTGCCAGAAGGAAGGGATGCCATTCAGAAGGACCTGAACAGGCTTGGAAAGTGGTTGGGGTGGGTGGGCTGCGATGTCCCTTCCAACCCAACTATCCTGTGATCCTATGTACTTCAGGATAAATATAGGACACCCTCTAAGAAACTGGAAGTGCTTTCTTACAGTTTGAGCACAAATGAAGGTATGTGGCATAGGAGTTCTCTTTTTAAGTAATTTCCAGGTGCTTTTATGTGGCGTTGTTGCACTTTGAACATTTACTTGTTAATCCTGTCGTTTGTTCTTAGAAGTACTGCTTCAGTTCTGTGAGTGTGAATTTTTATTTAAAAACACCATGCTTAGAAACAAGGCTTCAGAATTATTTGAGGTAAAGGGCTGATGTAGTGTGATCTTGAAATAGCAGGAGAATGTGTTTAAAGCTAGTTTTTCCATTAGAAATATAACGTAAAACTTCAGGGCAAGCAAAGCGCAGAGTGTTGTGCTGTGCTACAAGTACAAATCAGAGCAGTGTTCTCTTAGGAAAATGGTATTCACATAGCATGTACTAATTGTATATTATGAAAGTGTGTCTTAAAAGTTTCAGTGCCTTATGAAAATATCCCAGTACAGTACTTTTCTGTCTTAATGTTGTTTGCTTTGTTTACTTGAGAGCATGTCATCTCTATATACAATCTTTTTGATGTCACTTTAAGCTGTTGTTTCTTTTTGTTCTGTTTTGTCCTTTCCTCAAAGCTGTGTAAGTCTGGGTTAAGCAGACCAAGACAGGTACAGCCACTTTCTGTGAATTATCATTCACTTTTTAGAGTCATTTCAGAAGCTATCATGCTGGCGCTTCATGCTGGGCTGTCTGTAAACTAATGCTCATTACTAGCCTTGAGGTTTGTTTTGACAAGCTGCTTTTAGCTTTTGCATGGCAAATACTTTTCAGACTAATGTTCTTTAAGCATCTTTAACAAAACCACTAAGGCTGAAAAATATGTCAGTTTAAGTACAGTTTAATTCACTTACACGATGGCGATATCCTTAAAGCTATTGCATTACTTGTTCTTCAGAGAGTGCTTTTTATAAAGAATGTTTTGGATTAATGTGCATCTATTTCAAACAGTTCACACTTCAACAAAAATAGTCTAAATATTAGATTGCTTTGCCGTATTTTTTTTATACACAGAAGGAACTTCCTAAACTAACCCTTCATGCTTGCAGAAAGTATGACTTGTTCGTGATTGCTAACAAAATATTTTGATTTGAAGGAGAATTGTTAAATTAGAAGTGTCTTAAAAACTCCATTTATTTGTAGATACTGATAGATATTGTATTTAATGGATTGAGAGAACAAAGGCGGTTGCTTGCACACATTGCTTGGGGGTCATTCACTGGAGTAGTACCACCATGTGATTTTGGGCTATAACTGTTTCTTTTGTTTTAATTGATCTCACTACTTTTTGGAAAGAAAGCTTTAATTTGAGTTAATTCACTGACTGCCTTTTGTTTATTGATATAGTATAACTCATCCCAATAGCAAATTGTGTGTTTATGGGAAAATATTTGACAAAACTCTTTGCCAGTCTGAAGGAAAAAATAGAAATGGTTTGGTGGTTGGCTTATGTCCTTATCTTGATGAGGATTTTAGCTGTGCTAAAAATCAGGCTAGATTGAGATCTGAATTCACTCCTCGTTAGGTGCCTAATATGTTAACTAGTCGGCATTGTAGGCACCTAAGTAAGAAGACATTGCAAAGCCTGAAAAGTAACTGTCTTGTCCTTGGATGGAATACCACTATGTTGGGTGCCTGCAGCGTAGTGAAGGTGTAATGCTTAATTTTATACAGTAATTTAGGTAAGCTGCCTACCCAGGAAGTGGGAATATCTGTTCTCTTTGATGTCCATTTGACATCAAATATTGATATATAAATGTTCAAAAGAAATGAAGTCAAGCTTCAGCTCTATTTGCAGCCAGATGAGCTAACCACAAGGCTTAGGATCCCCACCACCTCCTTTAGTGTTTTCGAGTGAAGTTGATGCATTGATTGTTTTAAGGACATTTCAAACATATTTGGCTGAGAACTGTGGAGAAATTACAGGTTCAGATTCAAAGTCAGATGCTTCTGAGTAGCCTAGGTGGGAAACTTTCCTACCTCCCCAGATTAGGATATCTCCAATAACAATGAGTTTGAGATAACTGAGGTTAAGGTCAATGAGAATAGATTTAGGGTTTGCTGCATTATAGCTGAATGAATTTTTCAATTCTCAAGTATTCTTTCTGACAATTTAGGTATGGTTAGCATCATTAAATATAATCTTGATTTTTATAGGTAATTATCTTTGAATATATTAACTTACTATCAGTTCTCTTGTGAGATTAAATAACTGTAGCATACATACATATATATGTATATTACGTGTGCATATGTATATTATATAGTAGTATACATATATATAGTTTTATATATATGTATATATATATGTAGTTTAGGCTTTTTCTAGTCCTTATATATATATATATGTGTATGAGTGTGTGTATACATATATATTTATATAGGGACTAGAGAAAATATATATATATATATATATATGTATATATATAACTGATTGAGAAATATAGCCCTATTTCGTTAATTGAATTTTGGAAATTCAAAATGAACTTCTACATCTCAGAGTTTATGCATGTGATGATAAGCTCTGAAGCTTTGGAAGCTCTTTTGTGTCCTCCCAAAATGAGCTTTATTTTGGTGGATTGTCTACAAAACTGAAACAAAAGCTTTACGTTTAGAAAAAGGGAAGGTACAACCTCCCTTCCTGGAAGAGTTTATACAAATATTTCATAGCTGATAGAACTGTTTCTGATTTTGCTGTTGGGAATTTGGAACAACTGAACTGTTCAGAGCTTTGCACTTTGTCCTACCCAGGGCAGGCTCCCATCCAGGAAGAACACATTATTTTGTGTACAAATGCATTTATTTTGTTTTTCCACACTTTCTTGGGAGTGCCCAGAAGTTGGCAACATTATCGGGGCAACTCTGGTATTAGGATCTGAGATATTAATAATTTCTACCTAAATCTTGCCAAAGCTCCAGGTACATGAAACATCCTTACAGTATCCTGGAGGGCAGCAGCAGTACTGCCCTGTATTTCTGTGCTGTGATGACTGTATGTAGCTTCCTGACTGATTTTGTGGAAAAAATGGAGAGATACTGATGAAAGTACCCAGTGAATCCAAGTAACTGAGGAGCTGTGTTTCAGGGCATCTTTGTCTTAGGCTAAACCAGGGATCTTTTCAAACAGGAAAGTCTTAAGTTCTGTCTGGGATACTTGAAAAAATAAACAGCTAACAAAAAACTGAACTAATTGCTAAAATCACCGGGAAACTTGGAATAAAGATGCATTTAAACTTGATTAACACTTACTTCATAGTCCTGTTTTTTATGCTGTTTTTCTTAAATAACGTAGTTTAGGAGAGTTATTTTTCACATTGGCAGGACTCAAGATGCTGTGTTTTTCTTCTCATATAAATTACTATAATAAACGTTTCTCAGGATATCGATATTCTGATATCAGTTACAAATGCCTGTGCATTCTTATTCTCATTTCTTAATTTTCTTTGGCTTGTTGCAGTGCATATTGTGAAATTCTGGGTGTACTGAGGTTTTTGAACAAATGTTTTATGTGCACCTTCTTGCTTCTTGCAG
Seq C2 exon
GGAGGAGGAGCAGGTGCAGGAGCAACCACAGGAGTTTCACATGTCTCTCTGAGCACAATGAGTGTGGAAGCTGTATGTGAGAAGCTAAAGCAGATAGACGGTCTGGACCAGAGCATGCTGCCTCAGTACTCTGCAATTATAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016409:ENSGALT00000026464:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.194
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0053625=SAM_1=PU(52.5=63.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]