MmuINT0086562 @ mm10
Intron Retention
Gene
ENSMUSG00000036333 | Kidins220
Description
kinase D-interacting substrate 220 [Source:MGI Symbol;Acc:MGI:1924730]
Coordinates
chr12:25047894-25051226:+
Coord C1 exon
chr12:25047894-25047926
Coord A exon
chr12:25047927-25051094
Coord C2 exon
chr12:25051095-25051226
Length
3168 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
ATTTCCCTTGACTTATCTAGGCA
3' ss Score
7.25
Exon sequences
Seq C1 exon
CTGTGTGACTCTGGGTTTAACAAACAGAGACAG
Seq A exon
GTACAGAAACTCCTGGTGAAATCTCACTTACCCTACTAGGTTGTTAGATGGTCATCGGCTACTTCATGCTGGGCTGTTTATAGATCTGTGCTCATTCTGTGTCTTGGGTTTATTTCCATAGTTGCTTTCAGCCTCTGCATGGCAGTCATTGCTGACTAATCAGTTTTTAGCTTATCTAATAAATTGACTGAAGATGTGGTATTTCAGAGTGTACTGTTAATCTACTGACACCAGAAAGCAAACCCGCCACCTCAGGTAACTAGTGCTTTCATAGCTTTGCTCCCATTGGAGGAATTCTGATTAAGACTCATTTTGAAGCTTCCATCTAATGGTTTAAAACAAGCTAATGTGTGCTGCGTTGAGTTCTCCAAGTAAGAAAAATTAATAAATAAATTCTGACATAGAAAACCAGTTTACTGAAGCGATCTGTTCTGGATTACACAGGTGGATTTCAAGAGAGACAGCACATGCATGTTAAAGGATTAGCCTTTGGATTCTTTGTTCCCTCTCAATATAATTAGTTTCTTTTAAGAATTTAGCAACTTAATGTTTATATTCCTCTTATGATATTTCAATTAAAATTCATTATTTCAGCTATAAGGTTCATTTAATTTAAAAGTAATTTTAGTATATAATATTACTTTAGAAAAGGCTTGGAAAGTGATTCACATTTCTCCTTCATTCAAAGAAACTATTGGAACATATATGGTTTTTAAATTAGTAACTTATTGCTTGATAAAGACCAACGTACACATAGGAGTCAGACGTGCTCTTCACTCCGTGGCTGAGGTGGCCTCTGCTAGGTGTCAATACTTTACAGCGTTCTTCCTTTCTATTTTTAAACTAATGCACTCTTGGGGTAGACATTTGAAACTCTGCAATGTCCTGTTCAACTTGCTTGGCTTTTGCCCTTTAATTGATGGCCATTGATGGAGTTTATAATACAGCTGCTGTAGTGGTGGTGTTTGCCTGGTGGGGATTTCTGTTTCTCTCTGCCATGTGCATTAGTTGGAATTCTATGAGGAAAAGTGTTTTCTTCCTAATTCATCCTAATTCATTTACTTAAGTATTTAGTTTTAAGGCTGAGCATGGTGGTACACGCCTTTAGTTTCAGTACTTGGGAGGCAGAGACCAGCCAATCTCTGTAAGTTCAAGGCCAGCCTAGTCTACATAGTTCCAGGACAGCCAGAGCTACATAGAGAGATCTTGTCTTAAAAAAAAAAAAAAAAAAAAAAAAGGTCTTATCAGTATGAATTCATGGATTTTTTTTCTGTGAACTATTATAATATCATAATTTATATTTGTCAATCAAATATTTATTTTGTGATTTTTGAAACAAAAAAGAAAGTAAGCCAATGTAAATATATTGAAAGTAAGGACCCAAGTTAAAGGATTGGTTGACATTTAAAGGAATGGTATTATTTAACAGTAAAAGGAAGTGAAGTGTGACAAGATGAATGAATGAGCCTTAAAACAACACACCGTGAGAGTCGGACAGGGAGGGTCACACACCGTAGAAAGTGCCTGCAATAGACACTTCAAACACGGGGTTGCCTGGGACTAGGGTGGTGTTGAAGGAATTGGAGTAACTAATGGGAACAGTTTCTTTTGAGGGTGATGGCTCACAAACTATGTAAATAAAGTTAAAGTCATTGAATTGTACATTTAATGTGGAAGTTCCACGGCATGTGGAGAGGAAATCAGCATGGTTTTAAAATTCACATAGCTGAGAGTGCATAGTGAAAACACTGGCTGACTTACTAGACAGAAAAAAGAGCCATGTGCAAAGTTATGAAGACCAAAGTGTGAAAGACTGGTCTTCTGTTGTTATTATTTTTTTTTTTTTTTAAAGTGAAGCACCAGTTCATTTTTTTTTTTTAAAGATTTATTTATTTATTACATGTAAGTACACTGTAGCTGTCTTCAGACATTCCAGAAGAGGGCGTCAGATCTCGTTACAGATGGTTGTGAACCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTTGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCCTGTTGTTATTATTTTAACAGCAGCTCAACCCTGAATCGTGTACAATGTGGCACAGTTTATGGTTAAATAAAAACAAACTATAAATAAGTGTATTTGGTGCAGCTTGTTCCAGGTCATCTGTTCCCAAACTTCGATATACCTGTGTTGCCTTTGTAGAGCTAGGTAGAGTCCCTGACTCATAAAGTCACCGTTCCTGCTGTCTGAGTCTCCATTCCCATCTGAAACACCTAGGTGCATGCACACTCTTAACACACATGCACATATATGCATGCACATACATGCATGTGCATGCAACATGCACACAAACACACATGTGCACATGCATGTGTATGTATTTCTGTGGTAGTGCAACTATTTTTTCACATTACAAATTAACATTCACTGTGCTTCCCAGGTATTTTTAAACTATGGGATAGTCTATTGTCTCCTGACACCAGTAAAAGAGTCAGTCGGACATAAGTGAAATATTTATTTACCCTCCCCCACCTGGCAGTCCAGGAATTCACTGTGTAGGTGGCTTTGAACTAAGAGAAGTCCACCTGCCTCTGCTTCCTGAGGACTAGGACTAAAGGCCTGAGCCACCACTCCCAGCCAGAGGTGATAAATCTTATTTCCCACATGAAGAGTATGTTGAAGGCTGAACAGGGCGATTTCTTGGATAGTTTTAAAACCTTAGACTACCAAGGTAGTGTGTAGAATAGTTAAGATATTTGATATAGACACTTGAAGAAAGTTAGTCTTAGACATGTCTTTGTGCTCTGTAAGTGTAATTTTCTTCTTTTCTATTCCCTTAAGTTCTCTCCCTCTTACTGAGGGCAGTGCCCTTATTTCTTAAAGTTAAGTGGAATTATTTGAGGACTTGACATAGGCCTGGGCCACAGGATGGCCATCTTGTAAAAGTGCTTTGGGTCAGGCTGTCTCTACTGTAATAAATGCTACTCGTTACATGTCAGATAGCTGAATCTGTTTATTAAGATCTTTTTTTTCTTAAATTCTATATGCATTGGCTGTGATTTCTTTATTTCAGCAGTATAACTAGATGAATTTTTCTGTCACATGACCTCAAACACTTCATATTAATGTTACTCATATTTCCCTTGACTTATCTAG
Seq C2 exon
GCATCCGTCCCTGCCACAGGCACCTCTCTGTTACTGAGTTCAATGACTGTGGATATCGTGTGTGAGAAACTGAGACAGATAGAAGGGCTGGACCAGGGCATGCTGCCTCAGTATTGCACAACCATCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036333:ENSMUST00000066652:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=NA C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types