DreEX0041369 @ danRer10
Exon Skipping
Gene
ENSDARG00000031240 | kidins220a
Description
kinase D-interacting substrate 220a [Source:ZFIN;Acc:ZDB-GENE-041014-170]
Coordinates
chr17:34891110-34905336:-
Coord C1 exon
chr17:34905226-34905336
Coord A exon
chr17:34899022-34899078
Coord C2 exon
chr17:34891110-34891139
Length
57 bp
Sequences
Splice sites
3' ss Seq
CCACTGTCTCCTTTCATCAGGAT
3' ss Score
10.13
5' ss Seq
ATGGTAACT
5' ss Score
6.06
Exon sequences
Seq C1 exon
CCTTACTTCCCTCATCATGTTTATCACCTGCCCCGAAATTACCCCGGCCACCCCCATCACGCCCCCACCCGCCCTGCTTCTAAACTCCACAAGGACCCCGGTCTGGGACTA
Seq A exon
GATGTAATCAGAGAGGACTCCAGTGAGGGTCTTCCCTCTCCTACATCCCCTTCTATG
Seq C2 exon
ATTAAATCTCAGCCCTTCAGAATGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000031240_MULTIEX1-2/3=1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.691 A=1.000 C2=0.633
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCCCTCATCATGTTTATCACCTG
R:
TCATTCTGAAGGGCTGAGATTT
Band lengths:
132-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]