DreEX0041368 @ danRer10
Exon Skipping
Gene
ENSDARG00000031240 | kidins220a
Description
kinase D-interacting substrate 220a [Source:ZFIN;Acc:ZDB-GENE-041014-170]
Coordinates
chr17:34883598-34907683:-
Coord C1 exon
chr17:34907451-34907683
Coord A exon
chr17:34905226-34905336
Coord C2 exon
chr17:34883598-34883729
Length
111 bp
Sequences
Splice sites
3' ss Seq
TGTTCTCTCCACCTCTATAGCCT
3' ss Score
7.93
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
Exon sequences
Seq C1 exon
ATGTACGAGACGCACGCGAGCAGATGCACCTTGGAGGAGTCAGTTTTCCCACACTGCCCTTGCAAGATGCTTCGGTGCGGCCACACTCTGGGTTCGGGCAGCAGTCTTTGGCTTGTTCTCCTACAGGCTCTTTTCCTGGGTCTTTCCCCAATGCTGGAGTGTTGCCCGCCACTCAGCCCCACAGCAGCTACTTCAGTGGGCTTACAGGGCCACAACATCCCTTCTACAACCGG
Seq A exon
CCTTACTTCCCTCATCATGTTTATCACCTGCCCCGAAATTACCCCGGCCACCCCCATCACGCCCCCACCCGCCCTGCTTCTAAACTCCACAAGGACCCCGGTCTGGGACTA
Seq C2 exon
GGCTCTGTGGTCTCTAGTGGATCTCAGGTCCTGCTCAGTTCTCTGACCATCGATGGAGTATGTGAGAAGCTCAGACAGATCCAAGGCCTGGACTCCAGCATGCTGGAGCAGTACATCGGCACAATCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000031240_MULTIEX1-1/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.269 A=0.691 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCACCTTGGAGGAGTCAGT
R:
GAGCAGGACCTGAGATCCACT
Band lengths:
246-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]