MmuALTD1023055-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000036473 | Tbc1d24
Description
TBC1 domain family, member 24 [Source:MGI Symbol;Acc:MGI:2443456]
Coordinates
chr17:24183694-24184398:-
Coord C1 exon
chr17:24184381-24184398
Coord A exon
chr17:24184377-24184380
Coord C2 exon
chr17:24183694-24183848
Length
4 bp
Sequences
Splice sites
5' ss Seq
TAGGTCTGA
5' ss Score
1.23
3' ss Seq
TCCTCGCTTTTCCCAGGCAGTTT
3' ss Score
3.41
Exon sequences
Seq C1 exon
TGTCTCACTTTCTAAAAG
Seq A exon
GTAG
Seq C2 exon
TTTGTGCACTTAGCTGTCCATGCAGAGAACTTCCACTCAGAGATTGTCAGCGTGAAGGAGATGAGAGACATTTGGTCCTGGATCCCTGAGCGCTTTGCCCTCTGCCAACCCCTCCTGCTCTTCTCATCACTGCAGCATGGGTACAGCCTAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036473-25-31,26-31-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0753411=TLD=PU(12.0=40.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types