MmuINT0157418 @ mm10
Intron Retention
Gene
ENSMUSG00000036473 | Tbc1d24
Description
TBC1 domain family, member 24 [Source:MGI Symbol;Acc:MGI:2443456]
Coordinates
chr17:24183694-24186201:-
Coord C1 exon
chr17:24185204-24186201
Coord A exon
chr17:24183853-24185203
Coord C2 exon
chr17:24183694-24183852
Length
1351 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
TCCCTCCTCGCTTTTCCCAGGCA
3' ss Score
9.42
Exon sequences
Seq C1 exon
CCTAGGACCTGCCTTGTGGGCACACTGGGCACCATGGACCCCCCAGGGTACAATTGCTTTGTGGATAAGGACAAGATGGATGCATCCATCCAGGACCTGGGGCCAAAGGAGCTGAACTGCACGGAGCTACAGGAGCTGAAGCAACTGGCACGGCAGGGTTACTGGGCTCAGAGCCACACCCTGCGCGGGAAAGTGTACCAGCGCCTGATCCGGGACATCCCCTGCCGCACAGTCACACCTGATGCCAGCGTGTACAGTGACATTGTGGGGAAGATTGTGGGCAAGCACAGCAGCAGTAGTCTGCCCTTGCCTGAGTTTGTAGACAACACTCAGGTGCCCACCTACTGCCTGAACACACGGGGTGAAGGGGCTGTGCGCAAGATCCTCCTGTGTATTGCCAACCAGTTCCCTGACATCTCCTTCTGCCCTGCCCTGCCTGCTGTGGTGGCCTTGCTACTGCACTACAGCATCGATGAAGCTGAGTGTTTCGAAAAAGCCTGCCGCATCTTATCCTGCAATGACCCCACCAAGAAGCTCATTGACCAGAGCTTCCTGGCCTTTGAGTCTTCCTGTATGACATTTGGGGACCTGGTGAACAAGTACTGCCAGGCAGCCCATAAACTGATGGTGGCCGTGTCAGAGGACGTCCTGCAGGTCTACTCTGACTGGCAGCGATGGCTCTTTGGGGAGCTGCCCCTCAATTACTTTGCCCGTGTTTTTGATGTCTTCCTTGTAGAAGGCTACAAAGTATTGTACCGAGTTGCTCTGGCCATCCTCAAGTTCTTCCACAAGGTGAGAGCAGGACAGCCCCTTGAGTCAGACAATGTAAAGCAAGACATCCGAATGTTTGTCAAGGACATTGCCAAGACAGTGTCCCCTGAGAAACTACTAGAGAAGGCCTTTGCCATCCGCCTATTTTCCCGAAAGGAGATCCAGCTCTTGCAAATGGCCAATGAGAAAGCACTGAGGCAGAAGGGTATAACTGTCAAACAGAAGAG
Seq A exon
GTAGGTGGGCCCCAGGGTCATGTGCATGTGTGCCCGTGCTTCTCTGTGTGTGTGTTTGTGTGTATGCTTGTATACATGTGTGTGTGTGTGCACCTGTACTGTGTGTGTGTGTGTGTGTGTGTATGCGTGTGTGTGTGTGTGTGTATGCTTGTATGCATGTGTGTGTATGCTCCTGTGTGTGCACCTGTACTGTGTATATGTGTGTGTATGTGTGTGTGTGTGTATGCTTGTATGCATGCATGTGTGTGTGCTCCTATACTCTGTGTGTGTGTGTGTGTGTGTGTGTACCTGTACTGTGAGCATATTGCATCTGTGGAGTGGGAAGCTTTAGTGGTACGCATCCTTGAGGTCTGAGCATGAGTCTGCTTCTTGCCTTCTGTCTGTCCACCTGTCCACATGTGAATACAAAGACATTAGAAAGCAGGAAGGGCTTTGCAGTTATGGCCTTAACAAGACAAGGAAGCTGGGTATTACCAGGGGGTCAGAAGGTCCAGCAGTTTCCAGGCTGCCCTCCTAGAGGTCACATCAGAACTGCCCCTGCTCTGCCCTTCTAGCTCCAAGCTTCATGGCTGGCATTCTTCTGAATGCTGACTGTGGCCTCCCGTCCCTGGAAGCAGGGTTGGGAAGAGTCATGGTATTTGACATGATACTAGGTTACTGACACATGGCTGGCTGCTGGTATGGAGGTCACTTTCTCCTGGACCCGAAGGAAGGCATATCTGGGGACCGGTACCCACCACTAACCTCACCTTGTCTGTTTTATTTTTCTTCCTCTCCGTGTCCGTTGCTTCCTCCTGTTTCTCAGTGTCTCACTTTCTAAAAGGTAGGTCTGAACCTGAACCCTGATGCTTGCCTTCTCTGCCCTGCCTTTCTTCCAGCCACCTCTGCCTCTACTGCTTGGTGTCTCCCAAGGCCTGCGTGGCTCTCATGGGCTGGCTTCTGCTTGCTGCTTTAGCTTGTTGATGCAGGCACTGTCTGTCTGTCTGTCTGTCTGTCTGCCTGTCTGCCAATCTTTCTGCCTCAGTTATATGATCTGCTGGTGCTTGGCTGGCTCTGCAGTCTTGTCTTGCTGGAGGCTTACTTCATTTGTCCTGGTTTCTTAAAGAAAATGGCTTTTGTCCTCTGTGCCTCCAGGCTGGGCACTCTCCCATGTATCAGGAGGGAGGGGGGACTTCTAGGAATAATTTCACCCCATTTCCAACTGGCACCCAGAACCAGGCTGCAAACCTGGCTGGGTAGGTGAGACGCACTTTCTAGGCTGTGTACTAAAATGAAGCCGTGGGGCCACAGAGTAGGGGTAGAGTCAGGACTATGCTCACTGTGGGCTCTGATCCCTCCTCGCTTTTCCCAG
Seq C2 exon
GCAGTTTGTGCACTTAGCTGTCCATGCAGAGAACTTCCACTCAGAGATTGTCAGCGTGAAGGAGATGAGAGACATTTGGTCCTGGATCCCTGAGCGCTTTGCCCTCTGCCAACCCCTCCTGCTCTTCTCATCACTGCAGCATGGGTACAGCCTAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036473:ENSMUST00000168410:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=WD(100=64.6)
A:
NA
C2:
PF0753411=TLD=PU(12.0=40.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCACAAGGTGAGAGCAGGA
R:
GATGAGAAGAGCAGGAGGGGT
Band lengths:
347-1698
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types