RnoINT0148079 @ rn6
Intron Retention
Gene
ENSRNOG00000052204 | Tbc1d24
Description
TBC1 domain family, member 24 [Source:RGD Symbol;Acc:1306143]
Coordinates
chr10:13555884-13558384:-
Coord C1 exon
chr10:13557299-13558384
Coord A exon
chr10:13556043-13557298
Coord C2 exon
chr10:13555884-13556042
Length
1256 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
CCCCTCCTCGCTCTTCCCAGGCA
3' ss Score
9.94
Exon sequences
Seq C1 exon
AGGGTGTGTGGGATGACGGACTGGTTAACAGAAAACCCCCGAAGCCGGGGCTGCAGGGTTTAGCTGTTCTTTGTCCCCGCCCTGGCAGCCTGGGACCTGCCACCTAGGCACACGGGGCACCATGGACTCCCCAGGGTACAATTGCTTTGTGGATAAGGACAAGATGGACGCGTCCATCCAGGACCTGGGGCCAAAGGAGCTGAACTACACCGAGCTACAGGAGCTGAAGCAGCTGGCGCGGCAGGGTTACTGGGCTCAGAGCCACGCCCTGCGGGGGAAAGTGTACCAGCGTCTGATCCGGGACATCCCCTGCCGCACGGTCACACCCGACGCCAGCGTGTACAGCGACATCGTGGGGAAGATTGTGGGCAAGCACAGCAGCAGTAGCTTGCCCCTGCCTGAGTTTGTAGACAACACTCAGGTGCCCACCTACTGCCTGAACCCGCGGGGTGAGGGGGCCGTGCGCAAGATCCTCCTGTGCATCGCCAACCAGTTCCCCGACATCTCCTTCTGCCCTGCCCTGCCCGCGGTGGTGGCCTTGCTGCTACACTACAGCATTGACGAGGCCGAGTGCTTTGAAAAGGCCTGCCGCATCTTGTCCTGCAACGACCCCGGCAAGAAGCTCATTGACCAGAGCTTCCTGGCCTTCGAGTCTTCCTGTATGACGTTTGGAGACCTGGTGAACAAGTACTGCCAGGCAGCCCACAAACTGATGGTGGCCGTGTCAGAGGACGTTCTGCAGGTCTACTCTGACTGGCAGAGATGGCTCTTTGGGGAGCTGCCCCTCAACTACTTTGCCCGCGTTTTCGACGTCTTCCTTGTAGAAGGCTACAAGGTACTGTACCGAGTCGCTCTGGCCATCCTCAAGTTCTTCCACAAGGTGAGAGCAGGACAGCCCCTTGAGTCAGACAATGTAAAGCAAGACATCCGGATGTTTGTCAAGGACATTGCCAAGACAGTGTCCCCTGAGAAACTACTAGAGAAGGCCTTTGCCATCCGCCTGTTTTCCCGCAAGGAGATTCAGCTCTTGCAAATGGCCAATGAGAAAGCCCTGAGGCAGAAGGGTATTACTGTCAAACAGAAGAG
Seq A exon
GTAGGTAGACCCCAGGATTGTGTGCATGTGTGCCTGTGTGCGTGTGTGTGGCTGTGTGTGTGTGTGTGTGAAATGTGTGCCTGTGCCTGTGTGTATGTGTGTGAAATGTGTGCCTGTGTGCGTGTGCGTGTGTGTGTGCTCTGTGCCTGTGCTTTTGTGTGTGTGTGTGCCTGTATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTGTGAGCATACTGCATCTGTGGAGTGGGTAGCTTTAGTAGAATGCATCCTTGAGTCTGAGCATCAGTCTGCTTCTAGCCTTCTGTCTGTCCACCTCCCCACATGTGGATACAAAGACATTAAAAGGCAAGAAGGGTTTTGCAGTTATGGCCTTAACAAGACAAGGAAGCTGGATATTACCAGAGGGTCAGAAGGTCCAGCAGTTTCCAGGCTGGCCTCCTAGAGGTCTCATCAGAACAGCTCTTGCTCTGCCCTTCCAGCTCATGCTCCACGGCTGGCATTCTTTTGGATGCTGATTGTGGCCTTCCTGTCCCTGGGAGCAGGGTTGGGAAGAGTCGTGGTATTTGACACTTGACACTGTAGGCTGCTGTAAACAAGGCTGGCTTCAGTATGGAGATCATTTTCTCCTGGGCCCAAAGGAAGGTGTGTCTAGGGATCGGTACCCACCACTAACCTCGCCTTGTCTGTTTTATTTTTCTTCTCCGTGTCCGTTGCTTCCTCCTGTTTCTCAGTGTCTCACTTTCTAAAAGGTAGGTCTGAAACTGTACCTCGATGCTTGCTTTCTCTGCCCTGCCTTTCTTCCAGCCAGCTCTGGCTCTATTGCTTGGTGTCTCCCAAGGCCTGTGTGGCTCTCATGGGCTGGCTTCTGCTTGCTGCTTTAGCCTATTGACACAGGCATCGTTGGTCTGTCTGTCTGTCTGTCCATCTTTATGCCCGTTACATGATCCGCTGGTGCCCGGCTGGCTCTGCAGCTTTGTCTTGCTGGAGGCTTACTTCATTTGTCCTGGTTTCTTAAAGAAAAAGGCTTTTGTCTTCCATACCTGCAGGCTGGGCACCCTCCCATTATCAGGTGGGAGGTGGGGCTTCTAGGAATAATGTCACCCCATTTCCACCTGGCGCCCAGAGCCAGGCTGCAAACCTGGGTAGGTGAGACATCCTTTCCAGGCCATGTACCGAATAAAGCCGCAGGGCTGCAGGGTGGGGTGCAGTCAGGACTGTGCTCACTGTGGGCTCTGACCCCTCCTCGCTCTTCCCAG
Seq C2 exon
GCAGTTTGTACACTTGGCTGTCCATGCAGAGAACTTCCGCTCAGAGATTGTCAGTGTGAAGGAGATGAGAGACATTTGGTCCTGGATCCCTGAGCGCTTCGCCCTCTGCCAACCCCTCCTGCTCTTCTCGTCGCTGCAGCATGGGTACAGCCTAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052204:ENSRNOT00000081995:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=WD(100=64.6)
A:
NA
C2:
PF0753411=TLD=PU(6.8=24.1)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCCCCTTGAGTCAGACAA
R:
CTTAGGCTGTACCCATGCTGC
Band lengths:
351-1607
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]