GgaINT0012581 @ galGal3
Intron Retention
Gene
ENSGALG00000009217 | TBC1D24
Description
NA
Coordinates
chr14:14682117-14685631:-
Coord C1 exon
chr14:14685611-14685631
Coord A exon
chr14:14682276-14685610
Coord C2 exon
chr14:14682117-14682275
Length
3335 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
3' ss Seq
TTTTGTACTGTGTTTCTCAGGCA
3' ss Score
8.72
Exon sequences
Seq C1 exon
AAATACTTCTGTGTCAAGAAG
Seq A exon
GTCAGAGTTACTCAGCCGTATAGCATTGTTGGGTAATTAAGTCATTCATCAAGTCTTGGCCCAAAAAGCATTTCTCCAAGAACAAAAACCGCTGATTGTAAGACCCGATAAGCAGAGAACTTGCAAAGAAGGGCTGCCCTGTGAGCATTACGTCCCACAGATGTGTGGCTCCAAATTAACGCCTCTGGGACAATCTTTGGCCTTGTTGCAGGTGCCCTGGGTTAACTTCGGTGAGAGGCACATGCTAATGTTTGTACTAACTTACAGAATCAAAGTGGGACTCATTTCCATGTGTTTTCATGGCTGAAAGAACACCTCGAGAGCAAACGCATCAAGGCACGTTTCATTTCATATACGGTGTGTCGAGGATTTTGTGTCCAATCATTCAGAGTGCTTTTAAATTGCAGCCAAGCAAACCTGCACGTTCCACCTGTTCTTGTACCATCAATGCAAGATTCTGAAAGCAGCAGAAAGCAGAAGTCAACTTCTGCAGGGAAGCGGGGAGTTCAGAGCTGGGGGGCGGTGCGGATGAGAGCAGTGCCAGCAGACAGCCTGCAGCACCAGATTGTGTTTCAGCCTTAAACACCTGCAGCTGACAATGACTGAAAAGTATCACTTCCACCAGGCTTAAATTGTGCTACTTTCTAACCCAGTAGTACCTCGTGTTACTTGGGATAAGAGCACGACTTCCCAATAAGGAGCAGGAGGCACTGAGGGAAGCACTAAGGGTGAGATCTCAGTTAACTTACTCAGTTCTGGTGATGGTTTCAGGGCACATCTCCATGCCCTGCCAGTCCAAACCCAGTGTGCTTAGCTTTGTTGTCCACTGGATGACTTTGAAAGGTCTGTGGTGGCAGTGGCAGCTAAGCTTCGTTTCCAGCACCTGGCATGAAGTGGCAGCTCTCTGTTCGGCCGGTTTGTGTGCTGTCCGCTTCCACTCATGCCCTGCTTGGAACGCGGCTGCCCAGCTGAAGCAGATGGTTTTCAGCATTAACAAATATTTTCTGAAGTTAACAGAAATGCTGCCAAGAAGGAGAGGAGGAACGAAGGTCAGGTACTTGTAACTCTAGTTGCAGCTTTCTGAAAGCCATCGGATTTATAAAGCAGTGCAGAATTTGCTTTGGAGAGAACCGATGTCAGGGGGATTGGTTTCAACACTGGATTACATTTCCAGTCTCAGGCACCTACAGCTGTGATTTATGATGGGGAAATAAGTTATTCCACACAAAATCCTGCAGCCAAGCTGTGACCTGGGTTTCACTCACTGAATGGTGATGTGAAATGAAAAATGACTCACAGTGACATTGAGGGGGCGGCCTGGAATAGTTCCATGCGGCCGATGGAATGCAAGGTGTGTTTTGGTGCAGCAGAAGGCTCTGCTGGTAGAGGTGATATCCACCTACATGGCAGAGTCCTAGCCTATTTATCATAGAATCGTAGAATGGCCTGGGTTGCAAAGGACCACAATGCTCATTGAGTTCCAACCTCCTGCTATGTGCAGGGTCGCCAACCACCAGACCAGGCTGCCCAGAGCCACATCCAGCCTGGCTTTGAATGCCTCCAGGGATGGGGCATCCACAGCCTCCTTGGGCAACCTGTTCAGTGTGTCACCACCCTCTGGGTGAAAACCTTCCTCCTCATACCCAAGCTAAACCTCCCCTGTCTCAGTTTAAAACCGTTCCCCCTTGTCCTATCACTATCAACCCATGTAAACAGCCATTCCCCCATCATTACGTTTTTCCTCTGGAAGTTCACTGTGATAAACCAGTTGGCAGTGCTGAATGTTTTTCTAATTCCTCAAATGTGGGAAAAGCCCTGCTTTCTAATGAGCTCAAACCAGGCCTTTGTTTGTCAGCTGTGTTCCATAGTGCCACCAAGCCTTGAGGCACAGACAAATGGGACCAGAAGGGCTGAGACCTGCAGTAGGTCTCAGCCCTTTAAGTAGGTGTCCAAATGAGTTTCTTGCTAGCAGATAATGCAGGGCAGCAGTGCAAGTCGTGACTTGGTTTGTATTGCTGAAGGAAGCAGAGGTGCTGGGTTTTAAGTGACCGAAGAAGTCACCTCACTAGAAATGCTGGCACTAAGGCAGCTGTGCTAAATTTCAGTGAGCATTTCCCAATTGCTCTAACGTGCAGTGCAAATGCTGACCTCTTTGTACTACAGGCAAGAAAAAAAGATCTGTGTGATGTGTTTTAGGGAGCAGCCCAGCTGTGCAGTGCTGAGGTCTTCTGTGTTCCATGAATCCAGGAGGAAGGAAATGCAAAACTATCCAAAAACAAATGCATGAAACCCTGATTGGAAAATACTTGCAGTTCTTCCACAAGCTGAGCTCTTGCATGCAGAGCAAACTGCACAAAACTTGGTGCAACTAATTGCCACTCGGTAACTTAACACCTTGTGTGAGTCCATCTGTCACTTATCCCGTGCTCTTGGCTGTCACATTTGCATTTTAAGTCTTTAACATCACTCGTGAATTCAGTAACACTTGTCTAATCCCCAGGCTCTGAGTTTGTGTGTTTGCTTAATCTGAGAACCAAAGGCTGGCTGAGATGTCCCGCTCTTATTACTGTTTTTATTACTTTCAAGTGTTTGAAAGCCAGGAGTCAGTTTTCATAGATGTGTTGGGCCCCTTTGGGGGGGATGGGGGTGATTTCCAGTGCAGTCCCTGGCGTTCCTTCACTTCACCTGCTCAGATTTTGTCTGCATCTGTAGGGCTGGGAGCTTCTTCGCTTCTTAAGTGAGTGAAGTCATTCAGAATGAAGTGCTTCCAGTTGGAGGAACTCTGCAAAAGCTTCAAATATTTGGCTTGGATTAGCATTGCTTAGCATGGTAGTGCTGATTCCTCTAAGATTTCTCAGGGTTTTACAGATTCCCTTATTCCATAATACAGGCTGCACCTCAGAGGGGAAAAAACGCTCTCTTTCTTTCTGTCTGTTCCTGCAGGTATGTTGTTCTTTGCACTTAAGTACCAGCACTGGTAAGACCATCTCACACAGCAATTTCAGTTTGCTCTCTTCAATGTCAGGGTCAAGCTGGCTGCCTCCCCATTATGTCCTCCGTCTATACAGGTGCAGGCCACAGCTGCCATGCAGGGGTATTGCTTCAGGTGTTCCAGTAAGGATGGGTCACTTCTCCTCAAAGATTACGTTAAACTGCTGTATTTTATATTCTTCACTAAATCGTGGCCTTCTAATCCCATGGGTTGGAGCTTTGGGTACTGACATGTCTGCTAGGGCCTGTAGGTGTTCAGCCCTTTCCTTGTTGCCGTCCAGTAATCAGAGTCTGCTGGTTTTGTTCAGTCGTGGTCTCTCAGTGTTTTGTACTGTGTTTCTCAG
Seq C2 exon
GCAGAATGTGCACTTGGCAGTCCACGCAGAGAACTTCAAGTCTGAAATTGTCAGTGTGAAAGAGATGCGAGATATCTGGTCGTGGATCCCAGAGCGCTTTGCACTTTGCCAGCCCCTCTTGCTCTTCACCACCTTGGAACACGGCTGCAGTCTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009217:ENSGALT00000015002:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.188 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0753411=TLD=PU(12.0=24.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]