GgaEX0013532 @ galGal3
Exon Skipping
Gene
ENSGALG00000009217 | TBC1D24
Description
NA
Coordinates
chr14:14682117-14688924:-
Coord C1 exon
chr14:14687902-14688924
Coord A exon
chr14:14686225-14686242
Coord C2 exon
chr14:14682117-14682275
Length
18 bp
Sequences
Splice sites
3' ss Seq
TGCACCCCTCCTGTTTGCAGTGT
3' ss Score
8.52
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
TGTCGCATCCTTGCTTGCAACGACCCATCCAAGCGACTCATCGATCAGACCTTCCTGGCTTTTGAGTCCTCCTGCATGACCTTTGGGGACCTGGTGAACAAGTACTGCCAGGCAGCACACAAGCTGATGGTGGCAGTGTCTGAGGATGTGTTGGAGGTGTACTCAGACTGGCAGCGGTGGCTCTTTGGAGAGCTGCCCATGCTTTACATCGCTCGGGTCTTCGATGTGTTTCTGGTGGAGGGCTACAAAGTTCTCTATCGTGTTGCGTTGGCTATTCTGAAGTTTTTTCACAAAGTCAGAGCTGGGCAGCCCATGGAGTCGGACAGCGTGCAGCAGGATATCCGAGCTTTTGTCAGAGACATTGCTAAGTCAGTGTCTCCAGAGAGGCTTCTGGAAAAAGCCTTTGCTATCCGCCTGTTCTCACGGAAGGAGATCCAGCTGCTGCAGATGGCCAATGAGAAAGCTTTACAGCAGAAGGGCATCACAGTCAAACAGAAAAG
Seq A exon
TGTCACATCTCCAAAAAG
Seq C2 exon
GCAGAATGTGCACTTGGCAGTCCACGCAGAGAACTTCAAGTCTGAAATTGTCAGTGTGAAAGAGATGCGAGATATCTGGTCGTGGATCCCAGAGCGCTTTGCACTTTGCCAGCCCCTCTTGCTCTTCACCACCTTGGAACACGGCTGCAGTCTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009217_CASSETTE2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.286 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=WD(100=64.6)
A:
NO
C2:
PF0753411=TLD=PU(12.0=24.1)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAAGGGCATCACAGTCAA
R:
TCCACGACCAGATATCTCGCA
Band lengths:
116-134
Functional annotations
There are 0 annotated functions for this event