BtaEX0000210 @ bosTau6
Exon Skipping
Description
Bos taurus TBC1 domain family, member 24 (TBC1D24), mRNA. [Source:RefSeq mRNA;Acc:NM_001046296]
Coordinates
chr25:1998752-2001050:+
Coord C1 exon
chr25:1998752-1999822
Coord A exon
chr25:2000372-2000389
Coord C2 exon
chr25:2000892-2001050
Length
18 bp
Sequences
Splice sites
3' ss Seq
TGCTTCCTCCTGTTTTTCAGTGT
3' ss Score
9.38
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
TGCCGCATCCTGGCCTGCAACGACTCCAGCAGGAAGCTGGTAGACCAGAGCTTCCTGGCCTTCGAGTCCTCCTGCATGACGTTCGGGGACCTGGTGAACAAGTACTGCCAGGCGGCCCACAAGCTGATGGTGGCCGTGTCGGAGGACGTCCTGCAGGTGTACGCAGACTGGCAGCGCTGGCTCTTCGGGGAGCTGCCCCTCAGCTACTTCGCCCGTGTCTTTGACGTCTTCCTGGTGGAGGGTTACAAGGTGCTGTACCGCGTGGCACTGGCCATCCTCAAGTTCTTCCACAAGGTGAGGGCGGGGCAGCCGCTCGAGTCGGACAACGTGAAGCAGGACATCCGCGCCTTCGTCAGGGACATCGCCAAGACCGTATCTCCCGAGAAACTGCTGGAGAAGGCGTTTGCCATCCGCCTCTTCTCTCGGAAGGAGATTCAGCTCCTGCAGATGGCCAACGAAAAAGCTCTGAAGCAGAAGGGCATCACCGTCAAGCAGAAGAG
Seq A exon
TGTTTCACTTTCTAAAAG
Seq C2 exon
GCAGTTTGTGCACCTGGCTGTTCATGCAGACAACTTCCACTCAGAGATCGTCGGTGTGAAGGAGATGAGAGACATCTGGTCGTGGGTCCCTGAGCGGTTCGCCCTCTGCCAGCCCCTCCTGCTCTTCTCCTCACTGCAGCATGGATACAGCCTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005458_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=WD(100=64.6)
A:
NO
C2:
PF0753411=TLD=PU(15.1=24.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCACCGTCAAGCAGAAGA
R:
CCCACGACCAGATGTCTCTCA
Band lengths:
108-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development