DreEX0077474 @ danRer10
Exon Skipping
Gene
ENSDARG00000069339 | tbc1d24
Description
TBC1 domain family, member 24 [Source:ZFIN;Acc:ZDB-GENE-050809-65]
Coordinates
chr24:39244948-39248438:+
Coord C1 exon
chr24:39244948-39245990
Coord A exon
chr24:39248107-39248118
Coord C2 exon
chr24:39248280-39248438
Length
12 bp
Sequences
Splice sites
3' ss Seq
CTTTCTGCACTGTCCTTTAGCTC
3' ss Score
8.35
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
CTAGAACAGAATGGCCGGCTAGTTCCCCTCATTCTCTCTTCCGTTCAGCGTGTGAGGTCAGAGGTCATGGCTGGGGATTGCGGCGTATTCGTGGACTGGTCTCAGATGGGCGATGTGTCTCGAGACGCAGCTCCTGGTAAGACTGAATATAAAGACTTGAAGGAGCTGAAGCAGCATGCGCGCTCAGGCCAATGGGCGAAAAACCACAGCCAGCGCTCTGCCGTTTACCAACACCTGCTTAAAGCCCTGCCCTGTCGCACAGTCACCCCTGACGCTGAGGTTTACCGTGATATCGTGGGTAATTCCACCAGCAAACGTAATCCATCTGCGTATCCATTACCGGAGTTTGTTGATGGGACTGCAGTGCCGCAGTACTGTCTAAAAGCAGAGTCTATAGGCTCAGTGCATGCTGTGATTTCCTGCGTGGCAGGGCAGTTTCCGGATATCTCACACTGTCCCTCATTGCCTGCTGTGACCGCATTGATGATGCACTGGAGCCCGGATGAAGCTCAATGCTTCGAGAGCGTCAGCCGAATGTTAGCATGCAACGAACCAGGCCGGCGCTTACTAGATCAAACGTTCCTCGCGTATGAATCCGCATGCATGACCTTCGGCGACCTCGTGCATAAATACTGCCCGGCTGCGCATAAGCTGATGGTTGCCACGGCGACGGATGTACTGGAGGTGTACTCCGACTGGCAGCGGTGGGTTTTCGGAGATCTGCCGTTCAGCTTTGCGGCGCGCGTGCTGGATGTGTTTTTGGTGGAGGGCTATAAGGTGCTTTATCGCGTCGCTTTGGCCATTTTGAAGTTTTACCGCAAGCAGTTTGTGGCCTCCAACTCGGCTCCGAGCAAGCAGGACTCGGCGGCGGTCAGGAGGGACATTCAGACGTTTGTGCAGAGCATTGGGAAGAGCGTGACGCCGGATAAACTGCTGGAAAAGGCGTTTTCTATTCGTCTCTTCAGCCGGAAGGAGATCACGCTGCTGCAGCTGGCCAATGAGAAATCACTGCAGCAGAAAGGCATCACTGTCAAGCAGAAGAG
Seq A exon
CTCTATCAAAAG
Seq C2 exon
GCAGAATGTCCAGCTAGCCGTGAACGCAGATAATTTCAGCTCGGAGATCGTCAGCGCTAAAGAGATCCGAGATATCTGGTCGTGGATCCCGGAGCGATTCGCTTTGTGTCAGCCACAGCTGCTTTTCACCACATCTACACACGGCTGCAGCCTCAACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069339-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.072 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=WD(100=60.1)
A:
NO
C2:
PF0753411=TLD=PU(14.1=24.1)
Main Inclusion Isoform:
ENSDART00000155346fB6487
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCACTGCAGCAGAAAGGCA
R:
CTTTAGCGCTGACGATCTCCG
Band lengths:
102-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]