MmuEX0046471 @ mm9
Exon Skipping
Gene
ENSMUSG00000036473 | Tbc1d24
Description
TBC1 domain family, member 24 [Source:MGI Symbol;Acc:MGI:2443456]
Coordinates
chr17:24320639-24323146:-
Coord C1 exon
chr17:24322149-24323146
Coord A exon
chr17:24321326-24321343
Coord C2 exon
chr17:24320639-24320797
Length
18 bp
Sequences
Splice sites
3' ss Seq
TGCTTCCTCCTGTTTCTCAGTGT
3' ss Score
8.1
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
TGCCGCATCTTATCCTGCAATGACCCCACCAAGAAGCTCATTGACCAGAGCTTCCTGGCCTTTGAGTCTTCCTGTATGACATTTGGGGACCTGGTGAACAAGTACTGCCAGGCAGCCCATAAACTGATGGTGGCCGTGTCAGAGGACGTCCTGCAGGTCTACTCTGACTGGCAGCGATGGCTCTTTGGGGAGCTGCCCCTCAATTACTTTGCCCGTGTTTTTGATGTCTTCCTTGTAGAAGGCTACAAAGTATTGTACCGAGTTGCTCTGGCCATCCTCAAGTTCTTCCACAAGGTGAGAGCAGGACAGCCCCTTGAGTCAGACAATGTAAAGCAAGACATCCGAATGTTTGTCAAGGACATTGCCAAGACAGTGTCCCCTGAGAAACTACTAGAGAAGGCCTTTGCCATCCGCCTATTTTCCCGAAAGGAGATCCAGCTCTTGCAAATGGCCAATGAGAAAGCACTGAGGCAGAAGGGTATAACTGTCAAACAGAAGAG
Seq A exon
TGTCTCACTTTCTAAAAG
Seq C2 exon
GCAGTTTGTGCACTTAGCTGTCCATGCAGAGAACTTCCACTCAGAGATTGTCAGCGTGAAGGAGATGAGAGACATTTGGTCCTGGATCCCTGAGCGCTTTGCCCTCTGCCAACCCCTCCTGCTCTTCTCATCACTGCAGCATGGGTACAGCCTAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036473_MULTIEX2-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=WD(100=64.6)
A:
NO
C2:
PF0753411=TLD=PU(6.9=24.1)
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACTGAGGCAGAAGGGTAT
R:
TGTCTCTCATCTCCTTCACGCT
Band lengths:
113-131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types