GgaEX0013532 @ galGal4
Exon Skipping
Gene
ENSGALG00000009217 | TBC1D24
Description
Gallus gallus TBC1 domain family, member 24 (TBC1D24), mRNA. [Source:RefSeq mRNA;Acc:NM_001257271]
Coordinates
chr14:13934347-13941154:-
Coord C1 exon
chr14:13940132-13941154
Coord A exon
chr14:13938455-13938472
Coord C2 exon
chr14:13934347-13934505
Length
18 bp
Sequences
Splice sites
3' ss Seq
TGCACCCCTCCTGTTTGCAGTGT
3' ss Score
8.52
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
TGTCGCATCCTTGCTTGCAACGACCCATCCAAGCGACTCATCGATCAGACCTTCCTGGCTTTTGAGTCCTCCTGCATGACCTTTGGGGACCTGGTGAACAAGTACTGCCAGGCAGCACACAAGCTGATGGTGGCAGTGTCTGAGGATGTGTTGGAGGTGTACTCAGACTGGCAGCGGTGGCTCTTTGGAGAGCTGCCCATGCTTTACATCGCTCGGGTCTTCGATGTGTTTCTGGTGGAGGGCTACAAAGTTCTCTATCGTGTTGCGTTGGCTATTCTGAAGTTTTTTCACAAAGTCAGAGCTGGGCAGCCCATGGAGTCGGACAGCGTGCAGCAGGATATCCGAGCTTTTGTCAGAGACATTGCTAAGTCAGTGTCTCCAGAGAGGCTTCTGGAAAAAGCCTTTGCTATCCGCCTGTTCTCACGGAAGGAGATCCAGCTGCTGCAGATGGCCAATGAGAAAGCTTTACAGCAGAAGGGCATCACAGTCAAACAGAAAAG
Seq A exon
TGTCACATCTCCAAAAAG
Seq C2 exon
GCAGAATGTGCACTTGGCAGTCCACGCAGAGAACTTCAAGTCTGAAATTGTCAGTGTGAAAGAGATGCGAGATATCTGGTCGTGGATCCCAGAGCGCTTTGCACTTTGCCAGCCCCTCTTGCTCTTCACCACCTTGGAACACGGCTGCAGTCTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009217_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.286 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=WD(100=65.0)
A:
NO
C2:
PF0753411=TLD=PU(12.0=24.1)
Main Inclusion Isoform:
ENSGALT00000015002fB1549
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAAGGGCATCACAGTCAA
R:
TCCACGACCAGATATCTCGCA
Band lengths:
116-134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]