GgaINT0012581 @ galGal4
Intron Retention
Gene
ENSGALG00000009217 | TBC1D24
Description
Gallus gallus TBC1 domain family, member 24 (TBC1D24), mRNA. [Source:RefSeq mRNA;Acc:NM_001257271]
Coordinates
chr14:13934347-13937861:-
Coord C1 exon
chr14:13937841-13937861
Coord A exon
chr14:13934506-13937840
Coord C2 exon
chr14:13934347-13934505
Length
3335 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
3' ss Seq
TTTTGTACTGTGTTTCTCAGGCA
3' ss Score
8.72
Exon sequences
Seq C1 exon
AAATACTTCTGTGTCAAGAAG
Seq A exon
GTCAGAGTTACTCAGCCGTATAGCATTGTTGGGTAATTAAGTCATTCATCAAGTCTTGGCCCAAAAAGCATTTCTCCAAGAACAAAAACCGCTGATTGTAAGACCCGATAAGCAGAGAACTTGCAAAGAAGGGCTGCCCTGTGAGCATTACGTCCCACAGATGTGTGGCTCCAAATTAACGCCTCTGGGACAATCTTTGGCCTTGTTGCAGGTGCCCTGGGTTAACTTCGGTGAGAGGCACATGCTAATGTTTGTACTAACTTACAGAATCAAAGTGGGACTCATTTCCATGTGTTTTCATGGCTGAAAGAACACCTCGAGAGCAAACGCATCAAGGCACGTTTCATTTCATATACGGTGTGTCGAGGATTTTGTGTCCAATCATTCAGAGTGCTTTTAAATTGCAGCCAAGCAAACCTGCACGTTCCACCTGTTCTTGTACCATCAATGCAAGATTCTGAAAGCAGCAGAAAGCAGAAGTCAACTTCTGCAGGGAAGCGGGGAGTTCAGAGCTGGGGGGCGGTGCGGATGAGAGCAGTGCCAGCAGACAGCCTGCAGCACCAGATTGTGTTTCAGCCTTAAACACCTGCAGCTGACAATGACTGAAAAGTATCACTTCCACCAGGCTTAAATTGTGCTACTTTCTAACCCAGTAGTACCTCGTGTTACTTGGGATAAGAGCACGACTTCCCAATAAGGAGCAGGAGGCACTGAGGGAAGCACTAAGGGTGAGATCTCAGTTAACTTACTCAGTTCTGGTGATGGTTTCAGGGCACATCTCCATGCCCTGCCAGTCCAAACCCAGTGTGCTTAGCTTTGTTGTCCACTGGATGACTTTGAAAGGTCTGTGGTGGCAGTGGCAGCTAAGCTTCGTTTCCAGCACCTGGCATGAAGTGGCAGCTCTCTGTTCGGCCGGTTTGTGTGCTGTCCGCTTCCACTCATGCCCTGCTTGGAACGCGGCTGCCCAGCTGAAGCAGATGGTTTTCAGCATTAACAAATATTTTCTGAAGTTAACAGAAATGCTGCCAAGAAGGAGAGGAGGAACGAAGGTCAGGTACTTGTAACTCTAGTTGCAGCTTTCTGAAAGCCATCGGATTTATAAAGCAGTGCAGAATTTGCTTTGGAGAGAACCGATGTCAGGGGGATTGGTTTCAACACTGGATTACATTTCCAGTCTCAGGCACCTACAGCTGTGATTTATGATGGGGAAATAAGTTATTCCACACAAAATCCTGCAGCCAAGCTGTGACCTGGGTTTCACTCACTGAATGGTGATGTGAAATGAAAAATGACTCACAGTGACATTGAGGGGGCGGCCTGGAATAGTTCCATGCGGCCGATGGAATGCAAGGTGTGTTTTGGTGCAGCAGAAGGCTCTGCTGGTAGAGGTGATATCCACCTACATGGCAGAGTCCTAGCCTATTTATCATAGAATCGTAGAATGGCCTGGGTTGCAAAGGACCACAATGCTCATTGAGTTCCAACCTCCTGCTATGTGCAGGGTCGCCAACCACCAGACCAGGCTGCCCAGAGCCACATCCAGCCTGGCTTTGAATGCCTCCAGGGATGGGGCATCCACAGCCTCCTTGGGCAACCTGTTCAGTGTGTCACCACCCTCTGGGTGAAAACCTTCCTCCTCATACCCAAGCTAAACCTCCCCTGTCTCAGTTTAAAACCGTTCCCCCTTGTCCTATCACTATCAACCCATGTAAACAGCCATTCCCCCATCATTACGTTTTTCCTCTGGAAGTTCACTGTGATAAACCAGTTGGCAGTGCTGAATGTTTTTCTAATTCCTCAAATGTGGGAAAAGCCCTGCTTTCTAATGAGCTCAAACCAGGCCTTTGTTTGTCAGCTGTGTTCCATAGTGCCACCAAGCCTTGAGGCACAGACAAATGGGACCAGAAGGGCTGAGACCTGCAGTAGGTCTCAGCCCTTTAAGTAGGTGTCCAAATGAGTTTCTTGCTAGCAGATAATGCAGGGCAGCAGTGCAAGTCGTGACTTGGTTTGTATTGCTGAAGGAAGCAGAGGTGCTGGGTTTTAAGTGACCGAAGAAGTCACCTCACTAGAAATGCTGGCACTAAGGCAGCTGTGCTAAATTTCAGTGAGCATTTCCCAATTGCTCTAACGTGCAGTGCAAATGCTGACCTCTTTGTACTACAGGCAAGAAAAAAAGATCTGTGTGATGTGTTTTAGGGAGCAGCCCAGCTGTGCAGTGCTGAGGTCTTCTGTGTTCCATGAATCCAGGAGGAAGGAAATGCAAAACTATCCAAAAACAAATGCATGAAACCCTGATTGGAAAATACTTGCAGTTCTTCCACAAGCTGAGCTCTTGCATGCAGAGCAAACTGCACAAAACTTGGTGCAACTAATTGCCACTCGGTAACTTAACACCTTGTGTGAGTCCATCTGTCACTTATCCCGTGCTCTTGGCTGTCACATTTGCATTTTAAGTCTTTAACATCACTCGTGAATTCAGTAACACTTGTCTAATCCCCAGGCTCTGAGTTTGTGTGTTTGCTTAATCTGAGAACCAAAGGCTGGCTGAGATGTCCCGCTCTTATTACTGTTTTTATTACTTTCAAGTGTTTGAAAGCCAGGAGTCAGTTTTCATAGATGTGTTGGGCCCCTTTGGGGGGGATGGGGGTGATTTCCAGTGCAGTCCCTGGCGTTCCTTCACTTCACCTGCTCAGATTTTGTCTGCATCTGTAGGGCTGGGAGCTTCTTCGCTTCTTAAGTGAGTGAAGTCATTCAGAATGAAGTGCTTCCAGTTGGAGGAACTCTGCAAAAGCTTCAAATATTTGGCTTGGATTAGCATTGCTTAGCATGGTAGTGCTGATTCCTCTAAGATTTCTCAGGGTTTTACAGATTCCCTTATTCCATAATACAGGCTGCACCTCAGAGGGGAAAAAACGCTCTCTTTCTTTCTGTCTGTTCCTGCAGGTATGTTGTTCTTTGCACTTAAGTACCAGCACTGGTAAGACCATCTCACACAGCAATTTCAGTTTGCTCTCTTCAATGTCAGGGTCAAGCTGGCTGCCTCCCCATTATGTCCTCCGTCTATACAGGTGCAGGCCACAGCTGCCATGCAGGGGTATTGCTTCAGGTGTTCCAGTAAGGATGGGTCACTTCTCCTCAAAGATTACGTTAAACTGCTGTATTTTATATTCTTCACTAAATCGTGGCCTTCTAATCCCATGGGTTGGAGCTTTGGGTACTGACATGTCTGCTAGGGCCTGTAGGTGTTCAGCCCTTTCCTTGTTGCCGTCCAGTAATCAGAGTCTGCTGGTTTTGTTCAGTCGTGGTCTCTCAGTGTTTTGTACTGTGTTTCTCAG
Seq C2 exon
GCAGAATGTGCACTTGGCAGTCCACGCAGAGAACTTCAAGTCTGAAATTGTCAGTGTGAAAGAGATGCGAGATATCTGGTCGTGGATCCCAGAGCGCTTTGCACTTTGCCAGCCCCTCTTGCTCTTCACCACCTTGGAACACGGCTGCAGTCTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009217:ENSGALT00000015002:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0753411=TLD=PU(12.0=24.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]